RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 FANCFQ9NPI8 374 aa8.65□□□□□ -1.02
CLK3-208ENST00000562626 KCNJ16Q9NPI9 418 aa8.65□□□□□ -1.02
CLK3-208ENST00000562626 SLC7A10Q9NS82 523 aa8.65□□□□□ -1.02
CLK3-208ENST00000562626 IL20RAQ9UHF4 553 aa8.65□□□□□ -1.02
CLK3-208ENST00000562626 RASD1Q9Y272 281 aa8.65□□□□□ -1.02
CLK3-208ENST00000562626 HIF3AQ9Y2N7 669 aa8.65□□□□□ -1.02
CLK3-208ENST00000562626 NOSIPQ9Y314 301 aaKnown RBP8.65□□□□□ -1.02
CLK3-208ENST00000562626 SAMHD1Q9Y3Z3 626 aaKnown RBP8.65□□□□□ -1.02
CLK3-208ENST00000562626 CORINQ9Y5Q5 1042 aa8.65□□□□□ -1.02
CLK3-208ENST00000562626 LOC102725191A0A1B0GVB3 256 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 SLC35F4A4IF30 521 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 MCIDASD6RGH6 385 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 PDLIM1O00151 329 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 IMPA2O14732 288 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 CLOCKO15516 846 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 OR10H3O60404 316 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 GASTP01350 101 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 SAGP10523 405 aaPredicted RBP8.64□□□□□ -1.03
CLK3-208ENST00000562626 POU2F1P14859 743 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 IFNGR1P15260 489 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 PRKACGP22612 351 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 IGHV1-2P23083 117 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 IFNA8P32881 189 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 GSSP48637 474 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 IL1RL1Q01638 556 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 CAMK2DQ13557 499 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 MFSD13AQ14CX5 517 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 CARD17Q5XLA6 110 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 GTF2IRD2BQ6EKJ0 949 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 C1orf94Q6P1W5 598 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 NIPAL3Q6P499 406 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 AAED1Q7RTV5 226 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 PXKQ7Z7A4 578 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 GTF2IRD2Q86UP8 949 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 CXorf67Q86X51 503 aaPredicted RBP8.64□□□□□ -1.03
CLK3-208ENST00000562626 UEVLDQ8IX04 471 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 CLDN22Q8N7P3 220 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 OR8D4Q8NGM9 314 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 ALKBH3Q96Q83 286 aaPredicted RBP8.64□□□□□ -1.03
CLK3-208ENST00000562626 TSPAN32Q96QS1 320 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 OR2M2Q96R28 347 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 NIPSNAP1Q9BPW8 284 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 RBM24Q9BX46 236 aaKnown RBP8.64□□□□□ -1.03
CLK3-208ENST00000562626 PLA2G12AQ9BZM1 189 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 PIGMQ9H3S5 423 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 EGLN3Q9H6Z9 239 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 REEP1Q9H902 201 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 ARMC1Q9NVT9 282 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 EMC3Q9P0I2 261 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 SIGLEC7Q9Y286 467 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 ADAM18Q9Y3Q7 739 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 ANKHD1Q8IWZ3 2542 aaKnown RBP8.64□□□□□ -1.03
CLK3-208ENST00000562626 CELSR2Q9HCU4 2923 aa8.64□□□□□ -1.03
CLK3-208ENST00000562626 UNC119BA6NIH7 251 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 GPR171O14626 319 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 RNF13O43567 381 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 KRT36O76013 467 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 CCNB2O95067 398 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 VAMP5O95183 116 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 ADAP00813 363 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 ITGA5P08648 1049 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 ZNF43P17038 809 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 BIDP55957 195 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 SMIM11AP58511 58 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 ATP6AP1Q15904 470 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 ACKR1Q16570 336 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 MICAQ29983 383 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 ZBED5Q49AG3 693 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 ARMC4Q5T2S8 1044 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 C9orf135Q5VTT2 229 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 STAC2Q6ZMT1 411 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 SLC35D2Q76EJ3 337 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 OAFQ86UD1 273 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 ZNF100Q8IYN0 542 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 AQP11Q8NBQ7 271 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 OR10G2Q8NGC3 310 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 LINC01560Q8TB33 94 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 ASB10Q8WXI3 467 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 HTRA1Q92743 480 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 RNASE6Q93091 150 aaKnown RBP8.63□□□□□ -1.03
CLK3-208ENST00000562626 GTPBP3Q969Y2 492 aaKnown RBP8.63□□□□□ -1.03
CLK3-208ENST00000562626 APH1AQ96BI3 265 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 PKP2Q99959 881 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 SEMA6AQ9H2E6 1030 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 DNAJB9Q9UBS3 223 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 PLEKHB1Q9UF11 243 aaPredicted RBP8.63□□□□□ -1.03
CLK3-208ENST00000562626 TMCC3Q9ULS5 477 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 TMEM5Q9Y2B1 443 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 AP4S1Q9Y587 144 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 NOX1Q9Y5S8 564 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 KLF2Q9Y5W3 355 aaPredicted RBP8.63□□□□□ -1.03
CLK3-208ENST00000562626 CHD3Q12873 2000 aaKnown RBP8.63□□□□□ -1.03
CLK3-208ENST00000562626 ABCA4P78363 2273 aa8.63□□□□□ -1.03
CLK3-208ENST00000562626 IGKV1D-43A0A0B4J1Z2 117 aa8.62□□□□□ -1.03
CLK3-208ENST00000562626 H7C1C5 153 aa8.62□□□□□ -1.03
CLK3-208ENST00000562626 MRPL33O75394 65 aaKnown RBP8.62□□□□□ -1.03
CLK3-208ENST00000562626 LYZL6O75951 148 aa8.62□□□□□ -1.03
CLK3-208ENST00000562626 OR6A2O95222 327 aa8.62□□□□□ -1.03
CLK3-208ENST00000562626 IGHMP01871 453 aa8.62□□□□□ -1.03
CLK3-208ENST00000562626 HIST1H2ABP04908 130 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms