RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 POLDIP3Q9BY77 421 aaKnown RBP8.94□□□□□ -0.98
USP3-216ENST00000559873 SLCO5A1Q9H2Y9 848 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 SLC24A3Q9HC58 644 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 PLSCR4Q9NRQ2 329 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 JKAMPQ9P055 326 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 PDP1Q9P0J1 537 aaPredicted RBP8.94□□□□□ -0.98
USP3-216ENST00000559873 UPB1Q9UBR1 384 aa8.94□□□□□ -0.98
USP3-216ENST00000559873 CACNA1CQ13936 2221 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 NKX2-6A6NCS4 301 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 A8MXE2 369 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 CENPBD1B2RD01 187 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 ZNF587BE7ETH6 402 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 MS4A18H0YCH9 400 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 CDC42EP2O14613 210 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 KLF4O43474 513 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 ENTPD5O75356 428 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 HPRP00739 348 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 CGAP01215 116 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 IGHG1P01857 330 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 TSPAN19P0C672 248 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 POU2F1P14859 743 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 IFNGR1P15260 489 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 FUT4P22083 530 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 SLC6A6P31641 620 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 GSSP48637 474 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 RPS6KA3P51812 740 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 SORDQ00796 357 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 SRSF1Q07955 248 aaKnown RBP eCLIP8.93□□□□□ -0.98
USP3-216ENST00000559873 COX10Q12887 443 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 P2RY6Q15077 328 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 MS4A18Q3C1V0 323 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 FBXW9Q5XUX1 488 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 ZNF770Q6IQ21 691 aaPredicted RBP8.93□□□□□ -0.98
USP3-216ENST00000559873 SMARCD3Q6STE5 483 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 Q6ZT83 130 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 NUFIP2Q7Z417 695 aaKnown RBP8.93□□□□□ -0.98
USP3-216ENST00000559873 ZER1Q7Z7L7 766 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 LSRQ86X29 649 aaPredicted RBP8.93□□□□□ -0.98
USP3-216ENST00000559873 LIX1LQ8IVB5 337 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 GPR137CQ8N3F9 429 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 CLDN22Q8N7P3 220 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 ATG16L2Q8NAA4 619 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 OR6N1Q8NGY5 312 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 OR6X1Q8NH79 312 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 OR5K1Q8NHB7 308 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 FNDC8Q8TC99 324 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 ZNF775Q96BV0 537 aaPredicted RBP8.93□□□□□ -0.98
USP3-216ENST00000559873 ZNF385AQ96PM9 386 aaKnown RBP8.93□□□□□ -0.98
USP3-216ENST00000559873 USB1Q9BQ65 265 aaKnown RBP8.93□□□□□ -0.98
USP3-216ENST00000559873 OPN3Q9H1Y3 402 aaPredicted RBP8.93□□□□□ -0.98
USP3-216ENST00000559873 TXNIPQ9H3M7 391 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 S100A14Q9HCY8 104 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 ASB6Q9NWX5 421 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 MED29Q9NX70 200 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 VNN3Q9NY84 501 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 TAS2R5Q9NYW4 299 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 MALT1Q9UDY8 824 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 SIGLEC7Q9Y286 467 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 CDH10Q9Y6N8 788 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 PTPN13Q12923 2485 aa8.93□□□□□ -0.98
USP3-216ENST00000559873 USP9YO00507 2555 aaPredicted RBP8.92□□□□□ -0.98
USP3-216ENST00000559873 A6NIZ1 184 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 PRSS44E7EML9 344 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 G3V2T6 193 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 H0YHG0 523 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 XKRYO14609 159 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 IGHMP01871 453 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 F13BP05160 661 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 CD14P08571 375 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 IL32P24001 234 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 HOXC12P31275 282 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 CD79BP40259 229 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 CSNK1A1P48729 337 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 SELENOPP49908 381 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 IST1P53990 364 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 SH3BGRP55822 239 aaPredicted RBP8.92□□□□□ -0.98
USP3-216ENST00000559873 BIDP55957 195 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 CLRN1P58418 232 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 CTXN1P60606 82 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 RAP1BP61224 184 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 RAP1AP62834 184 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 TGFBR3Q03167 851 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 PPP1R8Q12972 351 aaKnown RBP8.92□□□□□ -0.98
USP3-216ENST00000559873 ITGADQ13349 1161 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 TOP3AQ13472 1001 aaPredicted RBP8.92□□□□□ -0.98
USP3-216ENST00000559873 LAPTM4AQ15012 233 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 ACKR1Q16570 336 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 GPR139Q6DWJ6 353 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 DPY19L2P2Q6ZN68 376 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 ZNF620Q6ZNG0 422 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 RASSF6Q6ZTQ3 369 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 SSX8Q7RTT4 187 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 MEX3DQ86XN8 651 aaKnown RBP8.92□□□□□ -0.98
USP3-216ENST00000559873 NOXO1Q8NFA2 376 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 MOSPD2Q8NHP6 518 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 TEX47Q8TBZ9 253 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 LRTOMTQ8WZ04 291 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 KISS1RQ969F8 398 aaPredicted RBP8.92□□□□□ -0.98
USP3-216ENST00000559873 ZNF566Q969W8 418 aa8.92□□□□□ -0.98
USP3-216ENST00000559873 GTPBP3Q969Y2 492 aaKnown RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms