RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 PLSCR2Q9NRY7 297 aa8.52□□□□□ -1.05
YBX3-215ENST00000544504 ITGB1BP2Q9UKP3 347 aa8.52□□□□□ -1.05
YBX3-215ENST00000544504 BLOC1S6Q9UL45 172 aa8.52□□□□□ -1.05
YBX3-215ENST00000544504 MCTS1Q9ULC4 181 aaKnown RBP8.52□□□□□ -1.05
YBX3-215ENST00000544504 MPDZO75970 2070 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 A6NIZ1 184 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 LRRN3E7EW58 273 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 NPIPA5E9PKD4 350 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 BHLHE40O14503 412 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 TNFSF11O14788 317 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 LRRTM2O43300 516 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 RNF13O43567 381 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 TXNDC12O95881 172 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 IGHMP01871 453 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 FCGR2AP12318 317 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 NR2C1P13056 603 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 ZNF3P17036 446 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 AHCYP23526 432 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 POLR2IP36954 125 aaKnown RBP8.51□□□□□ -1.05
YBX3-215ENST00000544504 EIF1AXP47813 144 aaKnown RBP8.51□□□□□ -1.05
YBX3-215ENST00000544504 PCYT1AP49585 367 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 CLDN18P56856 261 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 CLDN20P56880 219 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 CTXN1P60606 82 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 RAP1BP61224 184 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 SNRPGP62308 76 aaKnown RBP8.51□□□□□ -1.05
YBX3-215ENST00000544504 RAP1AP62834 184 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 H3F3AP84243 136 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 PMP22Q01453 160 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 TOP3AQ13472 1001 aaPredicted RBP8.51□□□□□ -1.05
YBX3-215ENST00000544504 FHL1Q13642 323 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 C1DQ13901 141 aaKnown RBP8.51□□□□□ -1.05
YBX3-215ENST00000544504 SNAPC1Q16533 368 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 RNFT1Q5M7Z0 435 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 CLEC12AQ5QGZ9 265 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 MEDAGQ5VYS4 303 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 GTF2IRD2BQ6EKJ0 949 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 SPNS3Q6ZMD2 512 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 PTCHD4Q6ZW05 846 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 ADCK1Q86TW2 530 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 GTF2IRD2Q86UP8 949 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 SIAH3Q8IW03 269 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 UEVLDQ8IX04 471 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 UBQLNLQ8IYU4 475 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 CISD2Q8N5K1 135 aaKnown RBP8.51□□□□□ -1.05
YBX3-215ENST00000544504 OR8D4Q8NGM9 314 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 OR10D3Q8NH80 312 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 FNDC8Q8TC99 324 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 RFKQ969G6 155 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 ERMAPQ96PL5 475 aaPredicted RBP8.51□□□□□ -1.05
YBX3-215ENST00000544504 SNX18Q96RF0 628 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 KATNB1Q9BVA0 655 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 YTHDF1Q9BYJ9 559 aaKnown RBP8.51□□□□□ -1.05
YBX3-215ENST00000544504 PLA2G12AQ9BZM1 189 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 TXNIPQ9H3M7 391 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 NRIP3Q9NQ35 241 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 CMC2Q9NRP2 79 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 PNPLA3Q9NST1 481 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 CLN6Q9NWW5 311 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 TAS2R5Q9NYW4 299 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 TVP23BQ9NYZ1 205 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 GRHPRQ9UBQ7 328 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 NPIPA1Q9UND3 350 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 ZNF175Q9Y473 711 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 ABCA2Q9BZC7 2435 aa8.51□□□□□ -1.05
YBX3-215ENST00000544504 SH3D21A4FU49 640 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 CENPBD1B2RD01 187 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 MCIDASD6RGH6 385 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 NPIPA2E9PIF3 369 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 C11orf98E9PRG8 122 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 NPIPA3F8WFD2 350 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 XKRYO14609 159 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 GPR171O14626 319 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 SURF4O15260 269 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 AHCYL1O43865 530 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 CXCL13O43927 109 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 AKR7A3O95154 331 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 PPP1R3DO95685 299 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 BCL10O95999 233 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 RENP00797 406 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 HOXD4P09016 255 aaPredicted RBP8.5□□□□□ -1.05
YBX3-215ENST00000544504 ZNF43P17038 809 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 EPHA2P29317 976 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 SHC1P29353 583 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 SDHAP31040 664 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 CLDN15P56746 228 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 FXYD6P3P58550 94 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 CXCR4P61073 352 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 RPL27P61353 136 aaKnown RBP8.5□□□□□ -1.05
YBX3-215ENST00000544504 HSF1Q00613 529 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 TMED1Q13445 227 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 MAD2L1BPQ15013 274 aaPredicted RBP8.5□□□□□ -1.05
YBX3-215ENST00000544504 PDK3Q15120 406 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 RNPS1Q15287 305 aaKnown RBP8.5□□□□□ -1.05
YBX3-215ENST00000544504 POU4F3Q15319 338 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 TESK1Q15569 626 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 CTU2Q2VPK5 515 aaKnown RBP8.5□□□□□ -1.05
YBX3-215ENST00000544504 RBM48Q5RL73 367 aaKnown RBP8.5□□□□□ -1.05
YBX3-215ENST00000544504 SLC25A30Q5SVS4 291 aa8.5□□□□□ -1.05
YBX3-215ENST00000544504 TMEM236Q5W0B7 351 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms