RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 FBXO30Q8TB52 745 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 WDR20Q8TBZ3 569 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 MGARPQ8TDB4 240 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 DYDC1Q8WWB3 177 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 CKAP2Q8WWK9 683 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 GTF3AQ92664 365 aaKnown RBP2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 MUL1Q969V5 352 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 SLC25A28Q96A46 364 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 EXOSC8Q96B26 276 aaKnown RBP2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 KLHL29Q96CT2 875 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 RBMXL1Q96E39 390 aaKnown RBP2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 DTNBP1Q96EV8 351 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 HES6Q96HZ4 224 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 ZIM3Q96PE6 472 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 FAM167BQ9BTA0 163 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 LRRC1Q9BTT6 524 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 PTDSS2Q9BVG9 487 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 TBL1XR1Q9BZK7 514 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 MYLK2Q9H1R3 596 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 ALG9Q9H6U8 611 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 ZNF665Q9H7R5 613 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 NTN4Q9HB63 628 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 BEX1Q9HBH7 125 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 MYOZ1Q9NP98 299 aaPredicted RBP2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 SLC52A3Q9NQ40 469 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 PFDN4Q9NQP4 134 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 SLC7A10Q9NS82 523 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 FARSBQ9NSD9 589 aaKnown RBP2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 MRPS18AQ9NVS2 196 aaKnown RBP2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 FAM120CQ9NX05 1096 aaKnown RBP2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 PAQR5Q9NXK6 330 aaPredicted RBP2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 C1RLQ9NZP8 487 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 MYEF2Q9P2K5 600 aaKnown RBP2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 UTS2RQ9UKP6 389 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 NFU1Q9UMS0 254 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 SNX12Q9UMY4 172 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 CFL2Q9Y281 166 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 PCDHGB5Q9Y5G0 923 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 CACNG2Q9Y698 323 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 ARFGEF3Q5TH69 2177 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 ARHGAP32A7KAX9 2087 aa2.51□□□□□ -2.01
CHMP4A-208ENST00000534106 A0A0G2JMP0 313 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 A0A0X1KG70 313 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 CLPSL1A2RUU4 121 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 FAM90A10PA6NDY2 464 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 OR6C65A6NJZ3 312 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 ZNF716A6NP11 495 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 ZNF724A8MTY0 619 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 HMGB1P1B2RPK0 211 aaPredicted RBP2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 POC1B-GALNT4F8VUJ3 575 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 TRAPPC2LH3BP13 241 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 CCDC188H7C350 402 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 PDLIM1O00151 329 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 RAB27BO00194 218 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 AP3B1O00203 1094 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 UPK1AO00322 258 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 TIMM23O14925 209 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 EIF3HO15372 352 aaKnown RBP eCLIP2.5□□□□□ -2.012e-6■□□□□ 9.8
CHMP4A-208ENST00000534106 RGS14O43566 566 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 RGS10O43665 173 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 CYTIPO60759 359 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 ZNF189O75820 626 aaPredicted RBP2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 WISP3O95389 354 aaPredicted RBP2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 LGI1O95970 557 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 TFP02787 698 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 ALPLP05186 524 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 CECR9P0C854 216 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 MYZAPP0CAP1 466 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 CHN1P15882 459 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 TCP1P17987 556 aaKnown RBP2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 PGAM1P18669 254 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 CCNA2P20248 432 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 NPR2P20594 1047 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 ME2P23368 584 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 TIA1P31483 386 aaKnown RBP eCLIP2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 SLC1A3P43003 542 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 MAGEA3P43357 314 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 MAGEA6P43360 314 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 MAGEB1P43366 347 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 ZNF41P51814 821 aaPredicted RBP2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 MAPK12P53778 367 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 CLNS1AP54105 237 aaKnown RBP2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 RAG2P55895 527 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 TPTEP56180 551 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 TMEM33P57088 247 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 LINC00205P59089 165 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 PRPS1P60891 318 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 CDK16Q00536 496 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 NAAAQ02083 359 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 GALNT1Q10472 559 aaPredicted RBP2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 IFT88Q13099 833 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 CUL3Q13618 768 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 EFNB3Q15768 340 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 SNCBQ16143 134 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 DECR1Q16698 335 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 PFKFB4Q16877 469 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 DEFB112Q30KQ8 113 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 KRT71Q3SY84 523 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 TTMPQ5BVD1 217 aa2.5□□□□□ -2.01
CHMP4A-208ENST00000534106 CCNJQ5T5M9 372 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms