RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 EEF1E1O43324 174 aaKnown RBP10.97□□□□□ -0.65
USP40-205ENST00000430158 CIB2O75838 187 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 SMNDC1O75940 238 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP40-205ENST00000430158 CNOT4O95628 575 aaKnown RBP10.97□□□□□ -0.65
USP40-205ENST00000430158 CST1P01037 141 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 ADORA3P0DMS8 318 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 ZNF43P17038 809 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 FPR3P25089 353 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 GTF2E2P29084 291 aaKnown RBP10.97□□□□□ -0.65
USP40-205ENST00000430158 CCKARP32238 428 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 SLC9A3P48764 834 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 SELENOPP49908 381 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 FOXG1P55316 489 aaPredicted RBP10.97□□□□□ -0.65
USP40-205ENST00000430158 LGALS3BPQ08380 585 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 FAM27E3Q08E93 113 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 GK3PQ14409 553 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 ANKDD1AQ495B1 522 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 STAC2Q6ZMT1 411 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 C22orf34Q6ZV56 151 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 LINGO2Q7L985 606 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 NANOGNBQ7Z5D8 188 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 LUZP2Q86TE4 346 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 OR2M2Q96R28 347 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 RBM24Q9BX46 236 aaKnown RBP10.97□□□□□ -0.65
USP40-205ENST00000430158 MED29Q9NX70 200 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 ELOVL5Q9NYP7 299 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 DNAJB9Q9UBS3 223 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 MALT1Q9UDY8 824 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 FOXD3Q9UJU5 478 aaPredicted RBP10.97□□□□□ -0.65
USP40-205ENST00000430158 TMEM5Q9Y2B1 443 aa10.97□□□□□ -0.65
USP40-205ENST00000430158 TRAV27A0A087WT01 109 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 NPIPB13A6NJU9 1138 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 NPIPB4C9JG80 1138 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 C11orf98E9PRG8 122 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 BLOC1S5-TXNDC5H3BN57 136 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 ST8SIA5O15466 376 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 CLOCKO15516 846 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 MRPL33O75394 65 aaKnown RBP10.96□□□□□ -0.65
USP40-205ENST00000430158 TIPRLO75663 272 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 GASTP01350 101 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 TP53P04637 393 aaPredicted RBP10.96□□□□□ -0.65
USP40-205ENST00000430158 HIST1H2ABP04908 130 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 COX5AP20674 150 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 CD79BP40259 229 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 CLDN17P56750 224 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 POU3F1Q03052 451 aaPredicted RBP10.96□□□□□ -0.65
USP40-205ENST00000430158 ATP6AP1Q15904 470 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 MICAQ29983 383 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 ZBED5Q49AG3 693 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 PHYHD1Q5SRE7 291 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 ARMC4Q5T2S8 1044 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 TSPO2Q5TGU0 170 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 FBXW9Q5XUX1 488 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 HMBOX1Q6NT76 420 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 Q6ZT83 130 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 HIST3H2AQ7L7L0 130 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 AAED1Q7RTV5 226 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 UEVLDQ8IX04 471 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 OR9Q2Q8NGE9 314 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 OR51A7Q8NH64 312 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 HIST1H2ACQ93077 130 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 APH1AQ96BI3 265 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 RSRC1Q96IZ7 334 aaKnown RBP10.96□□□□□ -0.65
USP40-205ENST00000430158 DGCR6LQ9BY27 220 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 REEP1Q9H902 201 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 SLC7A10Q9NS82 523 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 PARPBPQ9NWS1 579 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 PLEKHB1Q9UF11 243 aaPredicted RBP10.96□□□□□ -0.65
USP40-205ENST00000430158 SAMHD1Q9Y3Z3 626 aaKnown RBP10.96□□□□□ -0.65
USP40-205ENST00000430158 AP4S1Q9Y587 144 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 U3KQV3 271 aa10.96□□□□□ -0.65
USP40-205ENST00000430158 HRNRQ86YZ3 2850 aaPredicted RBP10.96□□□□□ -0.66
USP40-205ENST00000430158 HEATR1Q9H583 2144 aaKnown RBP10.96□□□□□ -0.66
USP40-205ENST00000430158 SLC35F4A4IF30 521 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 ARRDC5A6NEK1 342 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 UNC119BA6NIH7 251 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 PRSS44E7EML9 344 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 UPK3AO75631 287 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 CCNB2O95067 398 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 IGHV3-9P01782 118 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 IGHMP01871 453 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 F13BP05160 661 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 ITGA5P08648 1049 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 IFNGR1P15260 489 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 PSMB1P20618 241 aaKnown RBP10.95□□□□□ -0.66
USP40-205ENST00000430158 IGHV1-2P23083 117 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 AHCYP23526 432 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 COL8A1P27658 744 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 DNAJA1P31689 397 aaKnown RBP10.95□□□□□ -0.66
USP40-205ENST00000430158 SORDQ00796 357 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 RUNX1T1Q06455 604 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 TSPAN31Q12999 210 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 C1DQ13901 141 aaKnown RBP10.95□□□□□ -0.66
USP40-205ENST00000430158 ACKR1Q16570 336 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 SP5Q6BEB4 398 aaPredicted RBP10.95□□□□□ -0.66
USP40-205ENST00000430158 CASP12Q6UXS9 341 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 CD300LDQ6UXZ3 194 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 BEND4Q6ZU67 534 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 SLC35D2Q76EJ3 337 aa10.95□□□□□ -0.66
USP40-205ENST00000430158 RRM2BQ7LG56 351 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms