RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 C9orf135Q5VTT2 229 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 PODNL1Q6PEZ8 512 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 ZNF730Q6ZMV8 503 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 LINGO2Q7L985 606 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 NANOGNBQ7Z5D8 188 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 ZDHHC21Q8IVQ6 265 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 ICA1LQ8NDH6 482 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 S100PBPQ96BU1 408 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 BPIFA2Q96DR5 249 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 C14orf79Q96F83 325 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 DHRS1Q96LJ7 313 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 DACH2Q96NX9 599 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 MED18Q9BUE0 208 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 EMC6Q9BV81 110 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 SLCO5A1Q9H2Y9 848 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 IL1RAPQ9NPH3 570 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 NDRG3Q9UGV2 375 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 GPR52Q9Y2T5 361 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 APCP25054 2843 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 A0A1W2PRQ8 180 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 PDLIM1O00151 329 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 UPK3AO75631 287 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 CNOT4O95628 575 aaKnown RBP13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 ITGA5P08648 1049 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 DNAJA1P31689 397 aaKnown RBP13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 KRTAP10-9P60411 292 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 PRKCDQ05655 676 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 DGCR6Q14129 220 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 P2RY6Q15077 328 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 SEC23BQ15437 767 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 FAM98BQ52LJ0 330 aaKnown RBP13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 HMBOX1Q6NT76 420 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 MBOAT2Q6ZWT7 520 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 ZNF433Q8N7K0 673 aaPredicted RBP13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 OR52J3Q8NH60 311 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 LIPHQ8WWY8 451 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 KISS1RQ969F8 398 aaPredicted RBP13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 DUS3LQ96G46 650 aaKnown RBP13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 ALKBH3Q96Q83 286 aaPredicted RBP13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 OR2M2Q96R28 347 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 FUZQ9BT04 418 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 ANKRD19PQ9H560 264 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 SLC24A3Q9HC58 644 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 FANCFQ9NPI8 374 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 ASB6Q9NWX5 421 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 UPB1Q9UBR1 384 aa13.29□□□□□ -0.28
SMPDL3A-201ENST00000368440 CACNA1DQ01668 2161 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 BLOC1S5-TXNDC5H3BN57 136 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 SIAH2O43255 324 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 HIST1H2ABP04908 130 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 ITGA2P17301 1181 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 IL32P24001 234 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 GPR4P46093 362 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 SPIBQ01892 262 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 CHRNB3Q05901 458 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 RPL18Q07020 188 aaKnown RBP13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 ZP4Q12836 540 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 HIST3H2AQ7L7L0 130 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 BHLHA15Q7RTS1 189 aaPredicted RBP13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 PXKQ7Z7A4 578 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 MOSPD2Q8NHP6 518 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 HIST1H2ACQ93077 130 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 CHID1Q9BWS9 393 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 ARMC1Q9NVT9 282 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 RCE1Q9Y256 329 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 NOX1Q9Y5S8 564 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 ITPR2Q14571 2701 aa13.28□□□□□ -0.28
SMPDL3A-201ENST00000368440 A6NNC1 897 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 CDC42EP2O14613 210 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 RNF13O43567 381 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 RAD51DO75771 328 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 OR6A2O95222 327 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 TSPAN19P0C672 248 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 IFNGR1P15260 489 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 SSTR2P30874 369 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 AQP2P41181 271 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 MAGEA2P43356 314 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 MELKQ14680 651 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 CARD17Q5XLA6 110 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 IZUMO2Q6UXV1 221 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 TMEM123Q8N131 208 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 STEAP2Q8NFT2 490 aa13.27□□□□□ -0.28
SMPDL3A-201ENST00000368440 TACC2O95359 2948 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 SLC35F4A4IF30 521 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 SAC3D1A6NKF1 404 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 GADD45GO95257 159 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 F13BP05160 661 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 FASP25445 335 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 RRM2P31350 389 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 FHL1Q13642 323 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 LAPTM4AQ15012 233 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 DAZAP2Q15038 168 aaPredicted RBP13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 PHYHD1Q5SRE7 291 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 SLC35D2Q76EJ3 337 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 PIWIL3Q7Z3Z3 882 aaKnown RBP13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 RNF113BQ8IZP6 322 aaKnown RBP13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 POMGNT2Q8NAT1 580 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 OR13C2Q8NGS9 318 aa13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 FAM46AQ96IP4 442 aaKnown RBP13.27□□□□□ -0.29
SMPDL3A-201ENST00000368440 HDHD5Q9BXW7 423 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms