RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 FAM71CQ8NEG0 241 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 OR11H4Q8NGC9 324 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 OR6M1Q8NGM8 313 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 OR56B4Q8NH76 319 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 SCARB1Q8WTV0 552 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ASB5Q8WWX0 329 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 RFKQ969G6 155 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 MAL2Q969L2 176 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 MARC2Q969Z3 335 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 SGTBQ96EQ0 304 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 RNFT2Q96EX2 444 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ZNF764Q96H86 408 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 HIST1H2AHQ96KK5 128 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 KLHL15Q96M94 604 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 LINC00052Q96N35 136 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ZNF582Q96NG8 517 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 FCRL4Q96PJ5 515 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 IL4I1Q96RQ9 567 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 WACQ9BTA9 647 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 DPCDQ9BVM2 203 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 NLNQ9BYT8 704 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 REG4Q9BYZ8 158 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 GPR63Q9BZJ6 419 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ZNF436Q9C0F3 470 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 HDHD2Q9H0R4 259 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 C20orf85Q9H1P6 137 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ABCG5Q9H222 651 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 REEP4Q9H6H4 257 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ZNF304Q9HCX3 659 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 MYNNQ9NPC7 610 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 IFT46Q9NQC8 304 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 PCDHB16Q9NRJ7 776 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 MED17Q9NVC6 651 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 P4HTMQ9NXG6 502 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 RDH8Q9NYR8 311 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CRIM1Q9NZV1 1036 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 FRRS1LQ9P0K9 344 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ABI3Q9P2A4 366 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 COMMD3Q9UBI1 195 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 VPS29Q9UBQ0 182 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 LHX3Q9UBR4 397 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 MALT1Q9UDY8 824 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 NDRG3Q9UGV2 375 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 CRLS1Q9UJA2 301 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 ING1Q9UK53 422 aaPredicted RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 EXO1Q9UQ84 846 aaKnown RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 KCNK7Q9Y2U2 307 aa3.79□□□□□ -1.8
LIG3-211ENST00000588713 INTS1Q8N201 2190 aaKnown RBP3.79□□□□□ -1.8
LIG3-211ENST00000588713 TRRAPQ9Y4A5 3859 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 TRBV4-1A0A0J9YWV2 114 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 A0A1W2PRQ8 180 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 PRSS38A1L453 326 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 NAP1L6A6NFF2 107 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 MGAT4DA6NG13 374 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ZNF98A6NK75 572 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 OR5K4A6NMS3 321 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 A8MX80 341 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 C5orf58C9J3I9 102 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 LRRN3E7EW58 273 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 E9PLN8 166 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 G3V3Q6 166 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 J3KTA2 159 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 L7N2F9 121 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 AIPO00170 330 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 PAX4O43316 350 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 TLX2O43763 284 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 OR10H3O60404 316 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 TBX19O60806 448 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 KCNJ13O60928 360 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ADAM11O75078 769 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 NME6O75414 186 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 SCRG1O75711 98 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 AQP8O94778 261 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 RGS11O94810 467 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 APOL3O95236 402 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 SOX14O95416 240 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 GASTP01350 101 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 C1QCP02747 245 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 TCRBP04435 133 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 SERPIND1P05546 499 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 NMBP08949 121 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ANXA4P09525 319 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 RAB40ALP0C0E4 278 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 HIST1H2AGP0C0S8 130 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 NAT2P11245 290 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 PPP3CBP16298 524 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ELK1P19419 428 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 HIST1H2ADP20671 130 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 UQCRC2P22695 453 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 AHCYP23526 432 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 POU1F1P28069 291 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 CHRNB4P30926 498 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 GKP32189 559 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 THBS2P35442 1172 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 SOAT1P35610 550 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 SOX18P35713 384 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 CHI3L1P36222 383 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 IFNGR2P38484 337 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms