RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 MMP1P03956 469 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 ALDOBP05062 364 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 C2P06681 752 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 UBTFL1P0CB47 393 aaPredicted RBP1.85□□□□□ -2.11
CD44-238ENST00000534296 NCK1P16333 377 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 PCMT1P22061 227 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 CHMLP26374 656 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 ATP5C1P36542 298 aaKnown RBP1.85□□□□□ -2.11
CD44-238ENST00000534296 PTGDSP41222 190 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 DUSP3P51452 185 aaPredicted RBP1.85□□□□□ -2.11
CD44-238ENST00000534296 MNAT1P51948 309 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 HERVK_113P61574 105 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 CDK16Q00536 496 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 TCP10Q12799 353 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 DDX39BQ13838 428 aaKnown RBP1.85□□□□□ -2.11
CD44-238ENST00000534296 IL17AQ16552 155 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 CCDC14Q49A88 953 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 KCTD21Q4G0X4 260 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 CEP55Q53EZ4 464 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 C1orf220Q5T0J3 134 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 CNIH2Q6PI25 160 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 ZNF620Q6ZNG0 422 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 TAS2R42Q7RTR8 314 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 H2BFWTQ7Z2G1 175 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 CAMK2N1Q7Z7J9 78 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 Q8N9L7 120 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 C20orf203Q8NBC4 194 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 SPATA4Q8NEY3 305 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 OR51G1Q8NGK1 321 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 OR1L4Q8NGR5 311 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 RNF138Q8WVD3 245 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 CHCHD10Q8WYQ3 142 aaPredicted RBP1.85□□□□□ -2.11
CD44-238ENST00000534296 NDRG1Q92597 394 aaKnown RBP1.85□□□□□ -2.11
CD44-238ENST00000534296 ARPC1AQ92747 370 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 FBXO32Q969P5 355 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 PLEKHA8Q96JA3 519 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 MFFQ9GZY8 342 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 FN3KRPQ9HA64 309 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 TM9SF3Q9HD45 589 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 NT5MQ9NPB1 228 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 MMP26Q9NRE1 261 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 HYPKQ9NX55 129 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 SLC2A8Q9NY64 477 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 PCYOX1Q9UHG3 505 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 GNPTGQ9UJJ9 305 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 NUP50Q9UKX7 468 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 HPCAL4Q9UM19 191 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 CACNG2Q9Y698 323 aa1.85□□□□□ -2.11
CD44-238ENST00000534296 A0A0B4J2A0 478 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 A0A0G2JRQ6 117 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 ARHGEF35A5YM69 484 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 NKX2-6A6NCS4 301 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 FAM47DPA6NHR8 397 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 OR52A4PA6NMU1 304 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 SNTNA6NMZ2 147 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 E9PBE3 544 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 CXCL11O14625 94 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 PPP1R2P9O14990 202 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 LSM1O15116 133 aaKnown RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 HCRTR1O43613 425 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 PRKAB2O43741 272 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 FCMRO60667 390 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 PALMO75781 387 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 TNFSF13O75888 250 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 SERPINA3P01011 423 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 SLC2A3P11169 496 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 ZNF17P17021 662 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 CASP14P31944 242 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 NUDT1P36639 197 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 LONP1P36776 959 aaKnown RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 DDOSTP39656 456 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 SUB1P53999 127 aaKnown RBP eCLIP1.84□□□□□ -2.11
CD44-238ENST00000534296 SEC61GP60059 68 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 ACTR3P61158 418 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 PDIA2Q13087 525 aaKnown RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 UNC119Q13432 240 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 VGLL4Q14135 290 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 GGTLC2Q14390 218 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 GRB7Q14451 532 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 ZNF630Q2M218 657 aaPredicted RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 CARD16Q5EG05 197 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 CTSL3PQ5NE16 218 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 PRAMEF5Q5TYX0 476 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 PRAMEF6Q5VXH4 476 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 CYB5R2Q6BCY4 276 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 IGFL2Q6UWQ7 119 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 C6orf120Q7Z4R8 191 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 NKAPP1Q8N9T2 125 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 SUMF2Q8NBJ7 301 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 OR10G9Q8NGN4 311 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 DTX3LQ8TDB6 740 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 GEMIN6Q8WXD5 167 aaKnown RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 ACOT11Q8WXI4 607 aaPredicted RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 RDH5Q92781 318 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 N4BP2L2Q92802 583 aaPredicted RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 EXOSC8Q96B26 276 aaKnown RBP1.84□□□□□ -2.11
CD44-238ENST00000534296 ITCHQ96J02 903 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 SLC35E1Q96K37 410 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 FAM210BQ96KR6 192 aa1.84□□□□□ -2.11
CD44-238ENST00000534296 FCRL1Q96LA6 429 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms