RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 IGLV2-23P01705 113 aa2.55□□□□□ -2
CD44-215ENST00000525241 NCK1P16333 377 aa2.55□□□□□ -2
CD44-215ENST00000525241 SLC26A3P40879 764 aa2.55□□□□□ -2
CD44-215ENST00000525241 OPRD1P41143 372 aa2.55□□□□□ -2
CD44-215ENST00000525241 TFPI2P48307 235 aa2.55□□□□□ -2
CD44-215ENST00000525241 ACVR1Q04771 509 aa2.55□□□□□ -2
CD44-215ENST00000525241 EIF4EBP1Q13541 118 aaPredicted RBP2.55□□□□□ -2
CD44-215ENST00000525241 KLHL38Q2WGJ6 581 aa2.55□□□□□ -2
CD44-215ENST00000525241 FILIP1LQ4L180 1135 aa2.55□□□□□ -2
CD44-215ENST00000525241 ATAD3BQ5T9A4 648 aa2.55□□□□□ -2
CD44-215ENST00000525241 OR52W1Q6IF63 320 aa2.55□□□□□ -2
CD44-215ENST00000525241 C12orf56Q8IXR9 622 aa2.55□□□□□ -2
CD44-215ENST00000525241 ACOT4Q8N9L9 421 aa2.55□□□□□ -2
CD44-215ENST00000525241 STEAP2Q8NFT2 490 aa2.55□□□□□ -2
CD44-215ENST00000525241 MAGEE2Q8TD90 523 aaPredicted RBP2.55□□□□□ -2
CD44-215ENST00000525241 LRRC58Q96CX6 371 aa2.55□□□□□ -2
CD44-215ENST00000525241 CXorf40BQ96DE9 158 aa2.55□□□□□ -2
CD44-215ENST00000525241 RBM14Q96PK6 669 aaKnown RBP2.55□□□□□ -2
CD44-215ENST00000525241 FANCIQ9NVI1 1328 aa2.55□□□□□ -2
CD44-215ENST00000525241 CALYQ9NYX4 217 aa2.55□□□□□ -2
CD44-215ENST00000525241 XCL2Q9UBD3 114 aa2.55□□□□□ -2
CD44-215ENST00000525241 BLOC1S6Q9UL45 172 aa2.55□□□□□ -2
CD44-215ENST00000525241 DDX49Q9Y6V7 483 aaKnown RBP2.55□□□□□ -2
CD44-215ENST00000525241 NOTCH2Q04721 2471 aa2.54□□□□□ -2
CD44-215ENST00000525241 PTCH1Q13635 1447 aa2.54□□□□□ -2
CD44-215ENST00000525241 IGLV3-22A0A075B6J6 115 aa2.54□□□□□ -2
CD44-215ENST00000525241 IGKV2-28A0A075B6P5 120 aa2.54□□□□□ -2
CD44-215ENST00000525241 TRAV26-1A0A087WT03 109 aa2.54□□□□□ -2
CD44-215ENST00000525241 OR5B21A6NL26 309 aa2.54□□□□□ -2
CD44-215ENST00000525241 PEX7O00628 323 aa2.54□□□□□ -2
CD44-215ENST00000525241 RHOBTB1O94844 696 aa2.54□□□□□ -2
CD44-215ENST00000525241 IGKV2D-28P01615 120 aa2.54□□□□□ -2
CD44-215ENST00000525241 PLEKP08567 350 aaPredicted RBP2.54□□□□□ -2
CD44-215ENST00000525241 HPGDP15428 266 aa2.54□□□□□ -2
CD44-215ENST00000525241 RDXP35241 583 aaKnown RBP2.54□□□□□ -2
CD44-215ENST00000525241 LONP1P36776 959 aaKnown RBP2.54□□□□□ -2
CD44-215ENST00000525241 CXCL5P42830 114 aa2.54□□□□□ -2
CD44-215ENST00000525241 RPS9P46781 194 aaKnown RBP2.54□□□□□ -2
CD44-215ENST00000525241 CCT3P49368 545 aaKnown RBP2.54□□□□□ -2
CD44-215ENST00000525241 CDK16Q00536 496 aa2.54□□□□□ -2
CD44-215ENST00000525241 SPIBQ01892 262 aa2.54□□□□□ -2
CD44-215ENST00000525241 FZD2Q14332 565 aa2.54□□□□□ -2
CD44-215ENST00000525241 C16orf72Q14CZ0 275 aa2.54□□□□□ -2
CD44-215ENST00000525241 SGCAQ16586 387 aa2.54□□□□□ -2
CD44-215ENST00000525241 GUCA2BQ16661 112 aa2.54□□□□□ -2
CD44-215ENST00000525241 TMEM183BQ1AE95 376 aa2.54□□□□□ -2
CD44-215ENST00000525241 CFAP157Q5JU67 520 aa2.54□□□□□ -2
CD44-215ENST00000525241 PDZK1Q5T2W1 519 aa2.54□□□□□ -2
CD44-215ENST00000525241 LCN12Q6JVE5 192 aa2.54□□□□□ -2
CD44-215ENST00000525241 ZSCAN25Q6NSZ9 544 aa2.54□□□□□ -2
CD44-215ENST00000525241 THOC6Q86W42 341 aaKnown RBP2.54□□□□□ -2
CD44-215ENST00000525241 TRIM69Q86WT6 500 aa2.54□□□□□ -2
CD44-215ENST00000525241 ECHDC2Q86YB7 292 aa2.54□□□□□ -2
CD44-215ENST00000525241 TMEM183AQ8IXX5 376 aa2.54□□□□□ -2
CD44-215ENST00000525241 H1FOOQ8IZA3 346 aaPredicted RBP2.54□□□□□ -2
CD44-215ENST00000525241 FNDC5Q8NAU1 212 aa2.54□□□□□ -2
CD44-215ENST00000525241 ZNF540Q8NDQ6 660 aa2.54□□□□□ -2
CD44-215ENST00000525241 VN1R2Q8NFZ6 395 aa2.54□□□□□ -2
CD44-215ENST00000525241 OR1N2Q8NGR9 330 aa2.54□□□□□ -2
CD44-215ENST00000525241 OR2G3Q8NGZ4 309 aa2.54□□□□□ -2
CD44-215ENST00000525241 STARD8Q92502 1023 aa2.54□□□□□ -2
CD44-215ENST00000525241 DNTTIP1Q9H147 329 aa2.54□□□□□ -2
CD44-215ENST00000525241 GBA3Q9H227 469 aa2.54□□□□□ -2
CD44-215ENST00000525241 LHX9Q9NQ69 397 aa2.54□□□□□ -2
CD44-215ENST00000525241 BFARQ9NZS9 450 aa2.54□□□□□ -2
CD44-215ENST00000525241 ISY1Q9ULR0 285 aaKnown RBP2.54□□□□□ -2
CD44-215ENST00000525241 MMP17Q9ULZ9 603 aa2.54□□□□□ -2
CD44-215ENST00000525241 KCNIP3Q9Y2W7 256 aa2.54□□□□□ -2
CD44-215ENST00000525241 PHF3Q92576 2039 aaKnown RBP2.54□□□□□ -2
CD44-215ENST00000525241 SCN2AQ99250 2005 aa2.53□□□□□ -2
CD44-215ENST00000525241 PPIAL4EA0A075B759 164 aa2.53□□□□□ -2
CD44-215ENST00000525241 LRCOL1A6NCL2 159 aa2.53□□□□□ -2
CD44-215ENST00000525241 ALDOBP05062 364 aa2.53□□□□□ -2
CD44-215ENST00000525241 PTMAP06454 111 aaKnown RBP2.53□□□□□ -2
CD44-215ENST00000525241 CAPN1P07384 714 aa2.53□□□□□ -2
CD44-215ENST00000525241 PPIAL4FP0DN26 164 aa2.53□□□□□ -2
CD44-215ENST00000525241 ZNF136P52737 540 aa2.53□□□□□ -2
CD44-215ENST00000525241 FGF8P55075 233 aaPredicted RBP2.53□□□□□ -2
CD44-215ENST00000525241 ACTA1P68133 377 aa2.53□□□□□ -2
CD44-215ENST00000525241 EXOC3L2Q2M3D2 409 aa2.53□□□□□ -2
CD44-215ENST00000525241 DEFB116Q30KQ4 102 aa2.53□□□□□ -2
CD44-215ENST00000525241 Q6ZPB1 254 aaPredicted RBP2.53□□□□□ -2
CD44-215ENST00000525241 DHDDSQ86SQ9 333 aa2.53□□□□□ -2
CD44-215ENST00000525241 ZADH2Q8N4Q0 377 aa2.53□□□□□ -2
CD44-215ENST00000525241 Q8N976 141 aa2.53□□□□□ -2
CD44-215ENST00000525241 CCDC54Q8NEL0 328 aa2.53□□□□□ -2
CD44-215ENST00000525241 OR5D13Q8NGL4 314 aa2.53□□□□□ -2
CD44-215ENST00000525241 FAM110BQ8TC76 370 aa2.53□□□□□ -2
CD44-215ENST00000525241 SCFD1Q8WVM8 642 aa2.53□□□□□ -2
CD44-215ENST00000525241 TAAR1Q96RJ0 339 aa2.53□□□□□ -2
CD44-215ENST00000525241 TMEM43Q9BTV4 400 aa2.53□□□□□ -2
CD44-215ENST00000525241 FAIM2Q9BWQ8 316 aa2.53□□□□□ -2
CD44-215ENST00000525241 POLE4Q9NR33 117 aa2.53□□□□□ -2
CD44-215ENST00000525241 NECAP2Q9NVZ3 263 aa2.53□□□□□ -2
CD44-215ENST00000525241 SPATA7Q9P0W8 599 aa2.53□□□□□ -2
CD44-215ENST00000525241 PCYOX1Q9UHG3 505 aa2.53□□□□□ -2
CD44-215ENST00000525241 IGLV11-55A0A075B6I3 123 aa2.52□□□□□ -2.01
CD44-215ENST00000525241 CCDC182A6NF36 153 aa2.52□□□□□ -2.01
CD44-215ENST00000525241 CD5LO43866 347 aa2.52□□□□□ -2.01
CD44-215ENST00000525241 AIREO43918 545 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms