RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 ZNF699Q32M78 642 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 PTPN20Q4JDL3 420 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 C9orf66Q5T8R8 295 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ATF7IP2Q5U623 682 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 PDPK2PQ6A1A2 396 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ABRAXAS1Q6UWZ7 409 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ALKAL1Q6UXT8 129 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 TFAP2EQ6VUC0 442 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 HACD2Q6Y1H2 254 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ZNF730Q6ZMV8 503 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 STRADAQ7RTN6 431 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 PRSS42Q7Z5A4 293 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 SLC25A42Q86VD7 318 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 UNC93AQ86WB7 457 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 CDR2LQ86X02 465 aaPredicted RBP2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 CDC20BQ86Y33 519 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 CRLF3Q8IUI8 442 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 APOBEC3FQ8IUX4 373 aaKnown RBP2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ZBTB8OSQ8IWT0 167 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 TCTE3Q8IZS6 198 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 CADM2Q8N3J6 435 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 SFRP1Q8N474 314 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 PQLC3Q8N755 202 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 LEMD2Q8NC56 503 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 FBXO36Q8NEA4 188 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 LPCAT1Q8NF37 534 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 BEST4Q8NFU0 473 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 OR52H1Q8NGJ2 320 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 JOSD2Q8TAC2 188 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ZFAND1Q8TCF1 268 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ANKRD49Q8WVL7 239 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 HAS2Q92819 552 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 BCL2L2Q92843 193 aaPredicted RBP2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 RPL3LQ92901 407 aaKnown RBP2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 NT5C3BQ969T7 300 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 C18orf25Q96B23 403 aaPredicted RBP2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ELMO2Q96JJ3 720 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 RCHY1Q96PM5 261 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 OR52B2Q96RD2 323 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 RAB40CQ96S21 281 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 CPXM1Q96SM3 734 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 EBNA1BP2Q99848 306 aaKnown RBP2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ZNF670Q9BS34 389 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 NAT9Q9BTE0 207 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 FUNDC2Q9BWH2 189 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ELOVL4Q9GZR5 314 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 SLC5A7Q9GZV3 580 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 FAM96AQ9H5X1 160 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 POPDC2Q9HBU9 364 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 MRM3Q9HC36 420 aaKnown RBP2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 STMN3Q9NZ72 180 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 IL37Q9NZH6 218 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 RCOR3Q9P2K3 495 aaPredicted RBP2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ABCD2Q9UBJ2 740 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 DCDC2Q9UHG0 476 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 ENOPH1Q9UHY7 261 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 PSORS1C1Q9UIG5 152 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 FBXW2Q9UKT8 454 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 MGAT4AQ9UM21 535 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 FOXA2Q9Y261 457 aaPredicted RBP2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 TRAPPC4Q9Y296 219 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 OR1A2Q9Y585 309 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 GMPPBQ9Y5P6 360 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 COL4A5P29400 1685 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 MGAMO43451 1857 aa2.62□□□□□ -1.99
HMGB1P41-201ENST00000520234 COL1A2P08123 1366 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 ANK1P16157 1881 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 ARPC4-TTLL3A0A0A6YYG9 625 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 LOC390937A0A1W2PQ73 354 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 METTL15A6NJ78 407 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 ZNF98A6NK75 572 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 C12orf71A8MTZ7 269 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 FAM25AB3EWG3 89 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 FAM25CB3EWG5 89 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 FAM25GB3EWG6 89 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 SHISA9B4DS77 424 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 NEDD8-MDP1E9PL57 170 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 ATP6V1G2-DDX39BF2Z307 99 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 FXYD1O00168 92 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 PIRO00625 290 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 COPEO14579 308 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 PRPSAP2O60256 369 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 GALR3O60755 368 aaPredicted RBP2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 CCNKO75909 580 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 VAPBO95292 243 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 IFNB1P01574 187 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 HMGN1P05114 100 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 FHP07954 510 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 RBP1P09455 135 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 HSD17B1P14061 328 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 ZNF250P15622 560 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 ATF6P18850 670 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 ATP6V1B2P21281 511 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 GLRA1P23415 457 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 IL12AP29459 219 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 SHMT2P34897 504 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 EVI2BP34910 448 aa2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 SPRP35270 261 aaPredicted RBP2.61□□□□□ -1.99
HMGB1P41-201ENST00000520234 TGFBR2P37173 567 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms