RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 DUX4L3P0CJ86 424 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 DUX4L5P0CJ88 424 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 DUX4L6P0CJ89 424 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 DUX4L7P0CJ90 424 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 CCL2P13500 99 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 HPGDP15428 266 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 CCNA2P20248 432 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 MPV17P39210 176 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 FOXA1P55317 472 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 KLF3P57682 345 aaPredicted RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 RPS23P62266 143 aaKnown RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 BTG1P62324 171 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 SLC35A2P78381 396 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 PRB3Q04118 309 aaPredicted RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 GTF2H2Q13888 395 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 CEACAM16Q2WEN9 425 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 TRMT5Q32P41 509 aaKnown RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 FAM209AQ5JX71 171 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 HP1BP3Q5SSJ5 553 aaPredicted RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 GKAP1Q5VSY0 366 aaPredicted RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 PRAMEF8Q5VWM4 474 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 PRAMEF7Q5VXH5 474 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 RGS7BPQ6MZT1 257 aaPredicted RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 CDC73Q6P1J9 531 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 GTF2H2CQ6P1K8 395 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 DUX4L9Q6RFH8 374 aaPredicted RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 BTNL3Q6UXE8 466 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 OLIG3Q7RTU3 272 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 GSTA5Q7RTV2 222 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 ABHD12BQ7Z5M8 362 aaPredicted RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 CALHM3Q86XJ0 350 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 ANKRD13BQ86YJ7 626 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 PDZD9Q8IXQ8 264 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 CMIPQ8IY22 773 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 KLHL36Q8N4N3 616 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 SPICQ8N5J4 248 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 TMCO5AQ8N6Q1 288 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 UBL4BQ8N7F7 174 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 ZNF283Q8N7M2 679 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 LINC00482Q8N8I6 264 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 OR6Y1Q8NGX8 325 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 SLC25A43Q8WUT9 341 aaPredicted RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 MAIP1Q8WWC4 291 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 GATAD2BQ8WXI9 593 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 ST8SIA1Q92185 356 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 ZG16BQ96DA0 208 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 ZHX1-C8orf76Q96EF9 292 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 PRR25Q96S07 402 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 CHID1Q9BWS9 393 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 LINC00470Q9BZP3 86 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 DPAGT1Q9H3H5 408 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 C3orf14Q9HBI5 128 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 POPDC3Q9HBV1 291 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 GPR35Q9HC97 309 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 MOV10Q9HCE1 1003 aaKnown RBP3.93□□□□□ -1.78
USP4-209ENST00000475873 HHATLQ9HCP6 504 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 TMEM106BQ9NUM4 274 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 AHSPQ9NZD4 102 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 TMEM181Q9P2C4 612 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 SLC17A7Q9P2U7 560 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 DUX4Q9UBX2 424 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 ZNF225Q9UK10 706 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 CHST2Q9Y4C5 530 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 NOX1Q9Y5S8 564 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 CAPN6Q9Y6Q1 641 aa3.93□□□□□ -1.78
USP4-209ENST00000475873 DMBT1Q9UGM3 2413 aaPredicted RBP3.92□□□□□ -1.78
USP4-209ENST00000475873 A0A096LPK6 155 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 TMEM72A0PK05 275 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 AQP7P3A6NL99 342 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 ZNF264O43296 627 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 CHST1O43916 411 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 PCDH7O60245 1069 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 FCN3O75636 299 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 KRT33AO76009 404 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 URI1O94763 535 aaPredicted RBP3.92□□□□□ -1.78
USP4-209ENST00000475873 IGHV3-13P01766 116 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 ADH4P08319 380 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 UBL4AP11441 157 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 CD79AP11912 226 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 DDCP20711 480 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 UQCRC2P22695 453 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 CHATP28329 748 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 LCN1P31025 176 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 CAPZA2P47755 286 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 GIPRP48546 466 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 PTDSS1P48651 473 aaKnown RBP3.92□□□□□ -1.78
USP4-209ENST00000475873 ZNF81P51508 661 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 PRKAG1P54619 331 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 AQP5P55064 265 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 SH3BGRP55822 239 aaPredicted RBP3.92□□□□□ -1.78
USP4-209ENST00000475873 DLX1P56177 255 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 ATP6V0D1P61421 351 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 CD83Q01151 205 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 TAGLNQ01995 201 aaKnown RBP3.92□□□□□ -1.78
USP4-209ENST00000475873 DCTN2Q13561 401 aaKnown RBP3.92□□□□□ -1.78
USP4-209ENST00000475873 CBFBQ13951 182 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 PFKFB4Q16877 469 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 GSG1Q2KHT4 349 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 PDZK1Q5T2W1 519 aa3.92□□□□□ -1.78
USP4-209ENST00000475873 LETMD1Q6P1Q0 360 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms