RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DPP4P27487 766 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 GK3PQ14409 553 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 SLC5A12Q1EHB4 618 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 ZNF718Q3SXZ3 478 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 C17orf99Q6UX52 265 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 ANKRD53Q8N9V6 530 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 NMNAT3Q96T66 252 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 FOXQ1Q9C009 403 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 ENPP5Q9UJA9 477 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 OSGIN1Q9UJX0 560 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 ZNF281Q9Y2X9 895 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 ANKRD26Q9UPS8 1709 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 TMX2-CTNND1H3BSU7 103 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 GALR3O60755 368 aaPredicted RBP11.71□□□□□ -0.54
SDC3-201ENST00000336798 PHLDA2Q53GA4 152 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 ALKAL2Q6UX46 152 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 RAB3CQ96E17 227 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 TUBB1Q9H4B7 451 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 BABAM2Q9NXR7 383 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 ASB4Q9Y574 426 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 C3P01024 1663 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 HNF1AP20823 631 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 SIX1Q15475 284 aaPredicted RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 SPRED3Q2MJR0 410 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 MED25Q71SY5 747 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 SERPINA11Q86U17 422 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 SLC35F3Q8IY50 421 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 GGHQ92820 318 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 UHRF2Q96PU4 802 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 NRSN2Q9GZP1 204 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 NOX4Q9NPH5 578 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 NAP1L6A6NFF2 107 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 SOCS7O14512 581 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 OR7A17O14581 309 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 PRLHRP49683 370 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 PLA2G7Q13093 441 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 CATR1Q13166 79 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 MARCH8Q5T0T0 291 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 FAM185AQ8N0U4 392 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 UBAC2Q8NBM4 344 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 MFSD9Q8NBP5 474 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 OR5K2Q8NHB8 316 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 DCLRE1CQ96SD1 692 aaKnown RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 DEFB127Q9H1M4 99 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 ANKRD19PQ9H560 264 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 RNF212BA8MTL3 300 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 PAX6P26367 422 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 PPT1P50897 306 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 ADPRMQ3LIE5 342 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 SMUG1Q53HV7 270 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 HACD4Q5VWC8 232 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 UTP4Q969X6 686 aaKnown RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 BAZ2AQ9UIF9 1905 aaKnown RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 NKX6-3A6NJ46 265 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 C17orf112F2Z3M2 114 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 GFRA2O00451 464 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 PHF1O43189 567 aaPredicted RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 FZD7O75084 574 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 RAB38P57729 211 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 RPS25P62851 125 aaKnown RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 ZC3H3Q8IXZ2 948 aaKnown RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 KDM8Q8N371 416 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 SIRT6Q8N6T7 355 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 GPR150Q8NGU9 434 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 OR14A16Q8NHC5 309 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 MITD1Q8WV92 249 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 UBL7Q96S82 380 aaPredicted RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 LIN7BQ9HAP6 207 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 ASH2LQ9UBL3 628 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 M0QYG6 137 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 TRAF3IP2O43734 574 aaPredicted RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 YIF1AO95070 293 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 AOAHP28039 575 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 GPR85P60893 370 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 SLC35A2P78381 396 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 EMX1Q04741 257 aaPredicted RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 ZNF169Q14929 603 aaPredicted RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 GPR19Q15760 415 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 CBARPQ8N350 705 aaPredicted RBP11.7□□□□□ -0.54
SDC3-201ENST00000336798 LKAAEAR1Q8TD35 194 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 KIF25Q9UIL4 384 aa11.7□□□□□ -0.54
SDC3-201ENST00000336798 MYH7P12883 1935 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 TMED7-TICAM2A0A0A6YYA0 188 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 LGALS8O00214 317 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 SNAPINO95295 136 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 HOXD9P28356 352 aaPredicted RBP11.69□□□□□ -0.54
SDC3-201ENST00000336798 TAS2R46P59540 309 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 TNFRSF17Q02223 184 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 KCNAB1Q14722 419 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 NUMA1Q14980 2115 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 ZNF74Q16587 644 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 TAZQ16635 292 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 IDO2Q6ZQW0 420 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 C15orf39Q6ZRI6 1047 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 FRMD1Q8N878 549 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 EDAQ92838 391 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 GATA6Q92908 595 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 SORT1Q99523 831 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 KCNJ15Q99712 375 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 IL37Q9NZH6 218 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms