RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 FLVCR1Q9Y5Y0 555 aa16.23■□□□□ 0.19
CLN3-259ENST00000637551 IFNW1P05000 195 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 CCNA2P20248 432 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 CPOXP36551 454 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 P2RY4P51582 365 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 MTX3Q5HYI7 312 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 ZNF295-AS1Q8N0V1 137 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 ZNF610Q8N9Z0 462 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 WFDC6Q9BQY6 131 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 ADA2Q9NZK5 511 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 CLEC4AQ9UMR7 237 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 PRPF19Q9UMS4 504 aaKnown RBP16.22■□□□□ 0.19
CLN3-259ENST00000637551 USP22Q9UPT9 525 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 RCE1Q9Y256 329 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 NOSIPQ9Y314 301 aaKnown RBP16.22■□□□□ 0.19
CLN3-259ENST00000637551 TESMINQ9Y4I5 508 aa16.22■□□□□ 0.19
CLN3-259ENST00000637551 MTORP42345 2549 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 IGHV3-15A0A0B4J1V0 119 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 LYPD3O95274 346 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 COX5AP20674 150 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 ST3GAL3Q11203 375 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 IFI44LQ53G44 452 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 H1FNTQ75WM6 255 aaPredicted RBP16.21■□□□□ 0.19
CLN3-259ENST00000637551 TRPM8Q7Z2W7 1104 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 OFCC1Q8IZS5 231 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 ANKK1Q8NFD2 765 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 STEAP2Q8NFT2 490 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 OR9K2Q8NGE7 335 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 OR4D11Q8NGI4 311 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 APH1AQ96BI3 265 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 KTI12Q96EK9 354 aaPredicted RBP16.21■□□□□ 0.19
CLN3-259ENST00000637551 FKRPQ9H9S5 495 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 DCAF13Q9NV06 445 aaKnown RBP16.21■□□□□ 0.19
CLN3-259ENST00000637551 MRPL39Q9NYK5 338 aaKnown RBP16.21■□□□□ 0.19
CLN3-259ENST00000637551 ZNF226Q9NYT6 803 aa16.21■□□□□ 0.19
CLN3-259ENST00000637551 SH3D21A4FU49 640 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 AKAP8O43823 692 aaKnown RBP16.2■□□□□ 0.18
CLN3-259ENST00000637551 MRPL33O75394 65 aaKnown RBP16.2■□□□□ 0.18
CLN3-259ENST00000637551 PAX7P23759 505 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 CCKARP32238 428 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 RPS5P46782 204 aaKnown RBP16.2■□□□□ 0.18
CLN3-259ENST00000637551 TAS2R41P59536 307 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 MXRA7P84157 204 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 ITGADQ13349 1161 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 FBXW9Q5XUX1 488 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 TMEM225Q6GV28 225 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 TTC33Q6PID6 262 aaPredicted RBP16.2■□□□□ 0.18
CLN3-259ENST00000637551 STAC2Q6ZMT1 411 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 NUFIP2Q7Z417 695 aaKnown RBP16.2■□□□□ 0.18
CLN3-259ENST00000637551 ABHD12BQ7Z5M8 362 aaPredicted RBP16.2■□□□□ 0.18
CLN3-259ENST00000637551 P2RY8Q86VZ1 359 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 DEFB107AQ8IZN7 70 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 TMEM99Q8N816 258 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 POMGNT2Q8NAT1 580 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 VANGL1Q8TAA9 524 aaPredicted RBP16.2■□□□□ 0.18
CLN3-259ENST00000637551 LIPHQ8WWY8 451 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 TAAR8Q969N4 342 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 FAM162AQ96A26 154 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 BOD1Q96IK1 185 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 OXGR1Q96P68 337 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 ZNF300Q96RE9 604 aaPredicted RBP16.2■□□□□ 0.18
CLN3-259ENST00000637551 ASPNQ9BXN1 380 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 CRIM1Q9NZV1 1036 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 SLC7A7Q9UM01 511 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 SNX13Q9Y5W8 968 aa16.2■□□□□ 0.18
CLN3-259ENST00000637551 MED13LQ71F56 2210 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 SPG11Q96JI7 2443 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 TACC2O95359 2948 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 CPSF4LA6NMK7 179 aaKnown RBP16.19■□□□□ 0.18
CLN3-259ENST00000637551 ZNF814B7Z6K7 855 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 AKR7A3O95154 331 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 SERPINA1P01009 418 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 BGLAPP02818 100 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 HOXB6P17509 224 aaKnown RBP16.19■□□□□ 0.18
CLN3-259ENST00000637551 GLYATQ6IB77 296 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 CCDC103Q8IW40 242 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 ZNF100Q8IYN0 542 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 C1orf162Q8NEQ5 155 aaPredicted RBP16.19■□□□□ 0.18
CLN3-259ENST00000637551 TPD52L3Q96J77 140 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 CDRT15Q96T59 188 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 RIMS3Q9UJD0 308 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 ZNF229Q9UJW7 825 aa16.19■□□□□ 0.18
CLN3-259ENST00000637551 A6NNC1 897 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 B2RBV5 119 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 MT-ND1P03886 318 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 THY1P04216 161 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 ITGA2P17301 1181 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 SLC25A3Q00325 362 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 FAM27E3Q08E93 113 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 ANKDD1AQ495B1 522 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 SFRP5Q5T4F7 317 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 DEF8Q6ZN54 512 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 CYP4Z1Q86W10 505 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 RBM45Q8IUH3 476 aaKnown RBP16.18■□□□□ 0.18
CLN3-259ENST00000637551 RNF113BQ8IZP6 322 aaKnown RBP16.18■□□□□ 0.18
CLN3-259ENST00000637551 RBM15BQ8NDT2 890 aaKnown RBP16.18■□□□□ 0.18
CLN3-259ENST00000637551 HSH2DQ96JZ2 352 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 PRSS27Q9BQR3 290 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 C12orf49Q9H741 205 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 ACTR3BQ9P1U1 418 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms