RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 MAB21L2Q9Y586 359 aa0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 WDR19Q8NEZ3 1342 aa0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 RAD50Q92878 1312 aa0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 NID2Q14112 1375 aa0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 HEATR1Q9H583 2144 aaKnown RBP0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 PKDREJQ9NTG1 2253 aa0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 F8P00451 2351 aa0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 C2CD3Q4AC94 2353 aa0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 HELZ2Q9BYK8 2649 aaKnown RBP0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 HECTD1Q9ULT8 2610 aa0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 LAMA1P25391 3075 aa0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 CFAP47Q6ZTR5 3102 aa0.77□□□□□ -2.29
SMARCB1-209ENST00000635578 NBPF19A0A087WUL8 3843 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 FRYLO94915 3013 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 NBEAQ8NFP9 2946 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 HRNRQ86YZ3 2850 aaPredicted RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 AKAP6Q13023 2319 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ALPK2Q86TB3 2170 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ARHGAP32A7KAX9 2087 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ZMYM6O95789 1325 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 PTPRJQ12913 1337 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 IGLV3-22A0A075B6J6 115 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 FAM231BA6NCW3 169 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 LRRIQ4A6NIV6 560 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 OR6C65A6NJZ3 312 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ANKRD30BLA7E2S9 258 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 WASHC1A8K0Z3 465 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 E7EWF7 191 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 H0YL77 283 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 H3BTX0 84 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 CCER2I3L3R5 266 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 KIF2AO00139 706 aaPredicted RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 PDLIM1O00151 329 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 SLC17A2O00624 439 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 IMPA2O14732 288 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ZNF264O43296 627 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 SSX5O60225 188 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 JAK2O60674 1132 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 STX11O75558 287 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 MMP23AO75900 390 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 BCAS2O75934 225 aaPredicted RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 IGLV1-47P01700 117 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 IGKV3-11P04433 115 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 HPNP05981 417 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 GIPP09681 153 aaPredicted RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ZCCHC18P0CG32 403 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 CXCL8P10145 99 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 RRASP10301 218 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 HSPD1P10809 573 aaKnown RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 TOP1P11387 765 aaKnown RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ANXA3P12429 323 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 TDGF1P13385 188 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ETS1P14921 441 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 UQCRBP14927 111 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 H2AFXP16104 143 aaPredicted RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ZNF32P17041 273 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ATF6P18850 670 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 AHCYP23526 432 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 CCNCP24863 283 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 CCNE1P24864 410 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ATP5A1P25705 553 aaKnown RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ANXA13P27216 316 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 CD1BP29016 333 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ADORA2BP29275 332 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 CCND2P30279 289 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 GDI1P31150 447 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 MAT2AP31153 395 aaKnown RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 AKT2P31751 481 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 KIF5BP33176 963 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 RDXP35241 583 aaKnown RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 TNFSF9P41273 254 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 MAGEA5P43359 124 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 OR1G1P47890 313 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 UQCRFS1P47985 274 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 SLC6A8P48029 635 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 EMDP50402 254 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 GPC3P51654 580 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 VLDLRP98155 873 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 GABPB1Q06547 395 aaPredicted RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 CKAP4Q07065 602 aaKnown RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 SLC10A7Q0GE19 358 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 SNX1Q13596 522 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 EXOSC2Q13868 293 aaKnown RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 TFDP1Q14186 410 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 PDK1Q15118 436 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 PSMD5Q16401 504 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ZNF699Q32M78 642 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ZNF528Q3MIS6 628 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 SBK1Q52WX2 424 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 PAGE3Q5JUK9 113 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ATL3Q6DD88 541 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 RAET1GQ6H3X3 334 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 TWF2Q6IBS0 349 aaKnown RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 UFSP1Q6NVU6 142 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 HACD2Q6Y1H2 254 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 DNM1P46Q6ZS02 220 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 ERASQ7Z444 233 aa0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 NET1Q7Z628 596 aaPredicted RBP0.76□□□□□ -2.29
SMARCB1-209ENST00000635578 VPS36Q86VN1 386 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms