RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ZNF222Q9UK12 451 aa1.47□□□□□ -2.17
VPS50-216ENST00000484954 AK6Q9Y3D8 172 aaKnown RBP1.47□□□□□ -2.17
VPS50-216ENST00000484954 NCAPD2Q15021 1401 aa1.47□□□□□ -2.17
VPS50-216ENST00000484954 ZNF705GA8MUZ8 300 aaPredicted RBP1.46□□□□□ -2.18
VPS50-216ENST00000484954 CLDN5O00501 218 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 BET1O15155 118 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 PGAM1P18669 254 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 CALCRP30988 508 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 SLC26A3P40879 764 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 UBE2AP49459 152 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 PARP15Q460N3 678 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 GGTA1PQ4G0N0 100 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 Q6ZN92 141 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 PGAM4Q8N0Y7 254 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 LRRC43Q8N309 656 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 ARRDC1Q8N5I2 433 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 C15orf56Q8N910 161 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 CCDC54Q8NEL0 328 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 OR10G9Q8NGN4 311 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 SYNPRQ8TBG9 265 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 ESR2Q92731 530 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 ITCHQ96J02 903 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 ZNF416Q9BWM5 594 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 RSPH9Q9H1X1 276 aaPredicted RBP1.46□□□□□ -2.18
VPS50-216ENST00000484954 WDR76Q9H967 626 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 WFDC1Q9HC57 220 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 PCYOX1Q9UHG3 505 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 GGA2Q9UJY4 613 aa1.46□□□□□ -2.18
VPS50-216ENST00000484954 SHANK1Q9Y566 2161 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 RPL36A-HNRNPH2H7BZ11 118 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 RCBTB2O95199 551 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 H2BFMP0C1H6 154 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 YWHABP31946 246 aaKnown RBP1.45□□□□□ -2.18
VPS50-216ENST00000484954 ASMTP46597 345 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 AP3M2P53677 418 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 SLC25A52Q3SY17 297 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 LCN12Q6JVE5 192 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 FAM71F2Q6NXP2 309 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 BRD3OSQ6XYD6 125 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 SHISA6Q6ZSJ9 500 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 THOC6Q86W42 341 aaKnown RBP1.45□□□□□ -2.18
VPS50-216ENST00000484954 DHRSXQ8N5I4 330 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 MRPL43Q8N983 215 aaKnown RBP1.45□□□□□ -2.18
VPS50-216ENST00000484954 FAM3CQ92520 227 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 DNAJC19Q96DA6 116 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 TM4SF19Q96DZ7 209 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 MRPL45Q9BRJ2 306 aaKnown RBP1.45□□□□□ -2.18
VPS50-216ENST00000484954 SPXQ9BT56 116 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 PLA2G12AQ9BZM1 189 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 ACTR6Q9GZN1 396 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 POPDC2Q9HBU9 364 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 NOX3Q9HBY0 568 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 TBK1Q9UHD2 729 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 RASD1Q9Y272 281 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 F11RQ9Y624 299 aaKnown RBP1.45□□□□□ -2.18
VPS50-216ENST00000484954 ABCC9O60706 1549 aa1.45□□□□□ -2.18
VPS50-216ENST00000484954 YEATS2Q9ULM3 1422 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 TRAV40A0A0B4J280 105 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 TRIM64A6NGJ6 449 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 TRIM64BA6NI03 449 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 C12orf77C9JDV5 145 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 K7EM74 188 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 HIP1O00291 1037 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 PEX7O00628 323 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 RASGRF2O14827 1237 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 MT-ND3P03897 115 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 KLK3P07288 261 aaPredicted RBP1.44□□□□□ -2.18
VPS50-216ENST00000484954 ABOP16442 354 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 ZNF30P17039 623 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 COX5AP20674 150 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 NT5EP21589 574 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 PCMT1P22061 227 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 GDI1P31150 447 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 RFC4P35249 363 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 FGF8P55075 233 aaPredicted RBP1.44□□□□□ -2.18
VPS50-216ENST00000484954 NUCB2P80303 420 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 KLHL30Q0D2K2 578 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 SMARCB1Q12824 385 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 CYTH1Q15438 398 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 SGCAQ16586 387 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 UBE2SQ16763 222 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 DNLZQ5SXM8 178 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 TPGS2Q68CL5 300 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 LRRC8BQ6P9F7 803 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 SYT10Q6XYQ8 523 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 C19orf35Q6ZS72 473 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 RBM43Q6ZSC3 357 aaKnown RBP1.44□□□□□ -2.18
VPS50-216ENST00000484954 NEGR1Q7Z3B1 354 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 ACOT1Q86TX2 421 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 ZNF679Q8IYX0 411 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 OR10A7Q8NGE5 316 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 OR5W2Q8NH69 310 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 ZNF461Q8TAF7 563 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 ACTRT1Q8TDG2 376 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 HTR3CQ8WXA8 447 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 FOXC2Q99958 501 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 FICDQ9BVA6 458 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 OSBPL11Q9BXB4 747 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 SLC17A5Q9NRA2 495 aa1.44□□□□□ -2.18
VPS50-216ENST00000484954 SEC14L3Q9UDX4 400 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms