RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SERF1AO75920 110 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 IGHV3-23P01764 117 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 SERPIND1P05546 499 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 OR8U8P0C7N1 319 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 NTSP30990 170 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 TNNT2P45379 298 aaPredicted RBP3.84□□□□□ -1.79
UPF3B-203ENST00000478840 ACLYP53396 1101 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 RIPPLY3P57055 190 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 C21orf59P57076 290 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 LPAL2Q16609 132 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 GSG1Q2KHT4 349 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 VPS26BQ4G0F5 336 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 SAMD4BQ5PRF9 694 aaKnown RBP3.84□□□□□ -1.79
UPF3B-203ENST00000478840 CENPQQ7L2Z9 268 aaPredicted RBP3.84□□□□□ -1.79
UPF3B-203ENST00000478840 RDH10Q8IZV5 341 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 CCDC71LQ8N9Z2 235 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 OR6C4Q8NGE1 309 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 SLC22A8Q8TCC7 542 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 ACMSDQ8TDX5 336 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 SLC25A38Q96DW6 304 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 ZNF578Q96N58 590 aaPredicted RBP3.84□□□□□ -1.79
UPF3B-203ENST00000478840 TSNARE1Q96NA8 513 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 FOXN4Q96NZ1 517 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 PANX1Q96RD7 426 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 MRPL45Q9BRJ2 306 aaKnown RBP3.84□□□□□ -1.79
UPF3B-203ENST00000478840 RACGAP1Q9H0H5 632 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 GEMIN7Q9H840 131 aaKnown RBP3.84□□□□□ -1.79
UPF3B-203ENST00000478840 INPP5EQ9NRR6 644 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 KLHL21Q9UJP4 597 aa3.84□□□□□ -1.79
UPF3B-203ENST00000478840 UBQLN1Q9UMX0 589 aaKnown RBP3.84□□□□□ -1.79
UPF3B-203ENST00000478840 SMCO3A2RU48 225 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 TUBAL3A6NHL2 446 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 NCF1BA6NI72 391 aaPredicted RBP3.83□□□□□ -1.8
UPF3B-203ENST00000478840 NCF1CA8MVU1 366 aaPredicted RBP3.83□□□□□ -1.8
UPF3B-203ENST00000478840 PSTPIP1O43586 416 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 TOM1O60784 492 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 OR2F2O95006 317 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 IGHV3-48P01763 117 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 RBMY1CP0DJD4 496 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 TBPP20226 339 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 GATA2P23769 480 aaPredicted RBP3.83□□□□□ -1.8
UPF3B-203ENST00000478840 IFNA8P32881 189 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 SHMT2P34897 504 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 HSD17B2P37059 387 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 BTDP43251 543 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 RAB9AP51151 201 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 RGS8P57771 180 aaPredicted RBP3.83□□□□□ -1.8
UPF3B-203ENST00000478840 BCL2L1Q07817 233 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 TCTEX1D4Q5JR98 221 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 SLC8B1Q6J4K2 584 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 SASS6Q6UVJ0 657 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 CLEC2AQ6UVW9 174 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 TFAP2EQ6VUC0 442 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 MOB1BQ7L9L4 216 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 PRSS41Q7RTY9 318 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 GTSCR1Q86UQ5 136 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 ZNF525Q8N782 197 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 BBOF1Q8ND07 529 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 FAM81AQ8TBF8 368 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 PLPPR1Q8TBJ4 325 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 PYROXD1Q8WU10 500 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 FAM222BQ8WU58 562 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 TECTBQ96PL2 329 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 HIST1H4GQ99525 98 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 P2RY13Q9BPV8 354 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 C20orf85Q9H1P6 137 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 NUP50Q9UKX7 468 aa3.83□□□□□ -1.8
UPF3B-203ENST00000478840 CDHR2Q9BYE9 1310 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 FANCIQ9NVI1 1328 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 TMEM110-MUSTN1A8MSY1 372 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 GIG44P09565 113 aaPredicted RBP3.82□□□□□ -1.8
UPF3B-203ENST00000478840 UBTFL1P0CB47 393 aaPredicted RBP3.82□□□□□ -1.8
UPF3B-203ENST00000478840 FBXW4P57775 412 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 SPAG1Q07617 926 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 MERTKQ12866 999 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 MAB21L1Q13394 359 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 ALKBH6Q3KRA9 238 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 ZNF658Q5TYW1 1059 aaPredicted RBP3.82□□□□□ -1.8
UPF3B-203ENST00000478840 TMEM220Q6QAJ8 160 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 Q6ZSR3 168 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 LUZP2Q86TE4 346 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 PIANPQ8IYJ0 282 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 B3GNT7Q8NFL0 401 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 OR9A1PQ8NGU1 263 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 OR1E3Q8WZA6 343 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 STARD8Q92502 1023 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 PEX13Q92968 403 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 STMN2Q93045 179 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 CMTM7Q96FZ5 175 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 BPIFA3Q9BQP9 254 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 UBXN6Q9BZV1 441 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 ISG20L2Q9H9L3 353 aaKnown RBP3.82□□□□□ -1.8
UPF3B-203ENST00000478840 LY9Q9HBG7 655 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 GIN1Q9NXP7 522 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 HOXC10Q9NYD6 342 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 GCNT4Q9P109 453 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 Q9UF83 564 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 KIF25Q9UIL4 384 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 VANGL2Q9ULK5 521 aa3.82□□□□□ -1.8
UPF3B-203ENST00000478840 V9GY05 133 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms