RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 POU4F3Q15319 338 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 TTC33Q6PID6 262 aaPredicted RBP19.25■□□□□ 0.67
CLN3-207ENST00000395653 STAC2Q6ZMT1 411 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 Q6ZT83 130 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 TRPM8Q7Z2W7 1104 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 ZNF100Q8IYN0 542 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 RBM15BQ8NDT2 890 aaKnown RBP19.25■□□□□ 0.67
CLN3-207ENST00000395653 TMEM45BQ96B21 275 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 HSH2DQ96JZ2 352 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 GORASP2Q9H8Y8 452 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 PARPBPQ9NWS1 579 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 B3GALT5Q9Y2C3 310 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 CORINQ9Y5Q5 1042 aa19.25■□□□□ 0.67
CLN3-207ENST00000395653 ABCA12Q86UK0 2595 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 SH3D21A4FU49 640 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 MRPL33O75394 65 aaKnown RBP19.24■□□□□ 0.67
CLN3-207ENST00000395653 BGLAPP02818 100 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 IFNW1P05000 195 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 TCN1P20061 433 aaPredicted RBP19.24■□□□□ 0.67
CLN3-207ENST00000395653 PSMB1P20618 241 aaKnown RBP19.24■□□□□ 0.67
CLN3-207ENST00000395653 EDNRAP25101 427 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 GRPRP30550 384 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 PIN1Q13526 163 aaPredicted RBP19.24■□□□□ 0.67
CLN3-207ENST00000395653 GPAT4Q86UL3 456 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 ADPRHL1Q8NDY3 354 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 APH1AQ96BI3 265 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 PRRC1Q96M27 445 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 KLHL4Q9C0H6 718 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 MCCC2Q9HCC0 563 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 DCAF13Q9NV06 445 aaKnown RBP19.24■□□□□ 0.67
CLN3-207ENST00000395653 C6orf203Q9P0P8 240 aaPredicted RBP19.24■□□□□ 0.67
CLN3-207ENST00000395653 PRSS50Q9UI38 385 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 RIMS3Q9UJD0 308 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 SAMD4AQ9UPU9 718 aaKnown RBP19.24■□□□□ 0.67
CLN3-207ENST00000395653 GPR52Q9Y2T5 361 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 TESMINQ9Y4I5 508 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 FBN2P35556 2912 aa19.24■□□□□ 0.67
CLN3-207ENST00000395653 M0R082 166 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 MT-ATP6P00846 226 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 PTNP21246 168 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 IFNA8P32881 189 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 NTF4P34130 210 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 LTBQ06643 244 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 P2RY6Q15077 328 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 FKBP9P1Q75LS8 142 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 H1FNTQ75WM6 255 aaPredicted RBP19.23■□□□□ 0.67
CLN3-207ENST00000395653 ARHGAP24Q8N264 748 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 SCAIQ8N9R8 606 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 ZNF417Q8TAU3 575 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 ZNF587Q96SQ5 575 aaPredicted RBP19.23■□□□□ 0.67
CLN3-207ENST00000395653 AMBRA1Q9C0C7 1298 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 OR10A4Q9H209 315 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 SEC14L4Q9UDX3 406 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 A4GNTQ9UNA3 340 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 APCP25054 2843 aa19.23■□□□□ 0.67
CLN3-207ENST00000395653 PPP3CBP16298 524 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 RBM34P42696 430 aaKnown RBP19.22■□□□□ 0.67
CLN3-207ENST00000395653 ST3GAL3Q11203 375 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 DAZAP2Q15038 168 aaPredicted RBP19.22■□□□□ 0.67
CLN3-207ENST00000395653 FBXW9Q5XUX1 488 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 CASP12Q6UXS9 341 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 RINLQ6ZS11 566 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 ZC3HAV1Q7Z2W4 902 aaKnown RBP19.22■□□□□ 0.67
CLN3-207ENST00000395653 ZIC4Q8N9L1 334 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 WFIKKN1Q96NZ8 548 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 MOGAT1Q96PD6 335 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 HDHD5Q9BXW7 423 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 C1orf21Q9H246 121 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 MRPL39Q9NYK5 338 aaKnown RBP19.22■□□□□ 0.67
CLN3-207ENST00000395653 SNX13Q9Y5W8 968 aa19.22■□□□□ 0.67
CLN3-207ENST00000395653 NOTCH2Q04721 2471 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 LOC102725191A0A1B0GVB3 256 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 GOSR1O95249 250 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 CBLP22681 906 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 SFRP5Q5T4F7 317 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 CREB3L2Q70SY1 520 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 CXorf67Q86X51 503 aaPredicted RBP19.21■□□□□ 0.67
CLN3-207ENST00000395653 NKAIN4Q8IVV8 208 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 C10orf53Q8N6V4 93 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 OXGR1Q96P68 337 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 ZNF385AQ96PM9 386 aaKnown RBP19.21■□□□□ 0.67
CLN3-207ENST00000395653 MED18Q9BUE0 208 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 ASPNQ9BXN1 380 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 B3GAT1Q9P2W7 334 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 MALT1Q9UDY8 824 aa19.21■□□□□ 0.67
CLN3-207ENST00000395653 FAM221AA4D161 298 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 A6NNC1 897 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 LRRN3E7EW58 273 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 ARPC2O15144 300 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 ADAP00813 363 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 IGF2P01344 180 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 MSX2P35548 267 aaPredicted RBP19.2■□□□□ 0.66
CLN3-207ENST00000395653 ITGADQ13349 1161 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 ZNF74Q16587 644 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 EPHX4Q8IUS5 362 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 OFCC1Q8IZS5 231 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 STEAP2Q8NFT2 490 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 NSMCE2Q96MF7 247 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 HS6ST2Q96MM7 605 aa19.2■□□□□ 0.66
CLN3-207ENST00000395653 FKRPQ9H9S5 495 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms