RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 FAHD1Q6P587 224 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 C17orf47Q8NEP4 570 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF566Q969W8 418 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 CTRCQ99895 268 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SEMA4CQ9C0C4 833 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ENKD1Q9H0I2 346 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 GABARAPL1Q9H0R8 117 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 OSGIN1Q9UJX0 560 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 GMEB1Q9Y692 573 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ISPDA4D126 451 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 CDRT1O95170 752 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 IL1AP01583 271 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 AQP2P41181 271 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 RGS6P49758 472 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 EEF1A1P68104 462 aaKnown RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 KCNAB1Q14722 419 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF791Q3KP31 576 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 BRIX1Q8TDN6 353 aaKnown RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 HOXB13Q92826 284 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SLC30A2Q9BRI3 323 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ALG12Q9BV10 488 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 ALG8Q9BVK2 526 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 HCAR1Q9BXC0 346 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 QRSL1Q9H0R6 528 aaKnown RBP6.31□□□□□ -1.4
SF3B1-201ENST00000335508 LHX9Q9NQ69 397 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 GLS2Q9UI32 602 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 SCP2D1Q9UJQ7 156 aa6.31□□□□□ -1.4
SF3B1-201ENST00000335508 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 PRICKLE3O43900 615 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 KIAA0513O60268 411 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 PPP1R3DO95685 299 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 PTHP01270 115 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SPEM2Q0P670 501 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SQSTM1Q13501 440 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 IL18Q14116 193 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SSPNQ14714 243 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF227Q86WZ6 799 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 FRMD1Q8N878 549 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 LSM14AQ8ND56 463 aaKnown RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ZMYND19Q96E35 227 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 TMEM185BQ9H7F4 350 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 MED12Q93074 2177 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 TEX13CA0A0J9YWL9 993 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 PRKRAO75569 313 aaKnown RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 CRYABP02511 175 aaKnown RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 GLP1RP43220 463 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SOX2P48431 317 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 FOXK2Q01167 660 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 OR7A5Q15622 319 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 MPEG1Q2M385 716 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ACER2Q5QJU3 275 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 XKRXQ6PP77 449 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 CEACAM19Q7Z692 300 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 MAML2Q8IZL2 1156 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 TNFAIP8L1Q8WVP5 186 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 GIMAP5Q96F15 307 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 Q96M85 177 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 FUNDC2Q9BWH2 189 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 AMBRA1Q9C0C7 1298 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SYT4Q9H2B2 425 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SLC25A19Q9HC21 320 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 GPR83Q9NYM4 423 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 COPZ2Q9P299 210 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 DHDHQ9UQ10 334 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SHANK1Q9Y566 2161 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 DNAJB6O75190 326 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SERPINA5P05154 406 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 NGFRP08138 427 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ITGA5P08648 1049 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SBK2P0C263 348 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 DIO1P49895 249 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 NFATC3Q12968 1075 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SYT6Q5T7P8 510 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 AGAP7PQ5VUJ5 663 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 LIPKQ5VXJ0 399 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 WDR53Q7Z5U6 358 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 CDH24Q86UP0 819 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 KLBQ86Z14 1044 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 OR51L1Q8NGJ5 315 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF501Q96CX3 271 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 MUCL1Q96DR8 90 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 TMEM41AQ96HV5 264 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 AGAP4Q96P64 663 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 TMEM138Q9NPI0 162 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 EIF3KQ9UBQ5 218 aaKnown RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 TRBV4-1A0A0J9YWV2 114 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 CYR61O00622 381 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SURF4O15260 269 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ATE1O95260 518 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 FOLR1P15328 257 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 CD40LGP29965 261 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 RNF144AP50876 292 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ACTBP60709 375 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ACTG1P63261 375 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 COL28A1Q2UY09 1125 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF528Q3MIS6 628 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 RNASE11Q8TAA1 199 aaKnown RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 NUDT9Q9BW91 350 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 C1orf198Q9H425 327 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms