RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 USP43Q70EL4 1123 aa14.67□□□□□ -0.06
VPS29-204ENST00000548259 CMIPQ8IY22 773 aa14.67□□□□□ -0.06
VPS29-204ENST00000548259 SVOPLQ8N434 492 aa14.67□□□□□ -0.06
VPS29-204ENST00000548259 IL17RDQ8NFM7 739 aa14.67□□□□□ -0.06
VPS29-204ENST00000548259 TMEM186Q96B77 213 aa14.67□□□□□ -0.06
VPS29-204ENST00000548259 DOK1Q99704 481 aa14.67□□□□□ -0.06
VPS29-204ENST00000548259 TAPBPLQ9BX59 468 aa14.67□□□□□ -0.06
VPS29-204ENST00000548259 OR51I1Q9H343 314 aa14.67□□□□□ -0.06
VPS29-204ENST00000548259 HIF1ANQ9NWT6 349 aa14.67□□□□□ -0.06
VPS29-204ENST00000548259 CRNNQ9UBG3 495 aaPredicted RBP14.67□□□□□ -0.06
VPS29-204ENST00000548259 A0A1W2PPM1 405 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 LGI1O95970 557 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 TFP02787 698 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 IMPDH2P12268 514 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 MAD2L1Q13257 205 aaPredicted RBP14.66□□□□□ -0.06
VPS29-204ENST00000548259 IL23RQ5VWK5 629 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 TYW3Q6IPR3 259 aaKnown RBP14.66□□□□□ -0.06
VPS29-204ENST00000548259 C10orf107Q8IVU9 208 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 KRTCAP2Q8N6L1 136 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 MIPOL1Q8TD10 442 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 MZB1Q8WU39 189 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 CKAP2Q8WWK9 683 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 ROPN1LQ96C74 230 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 C1orf50Q9BV19 199 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 GATA5Q9BWX5 397 aaPredicted RBP14.66□□□□□ -0.06
VPS29-204ENST00000548259 OSGIN1Q9UJX0 560 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 PRDM4Q9UKN5 801 aa14.66□□□□□ -0.06
VPS29-204ENST00000548259 TMEM72A0PK05 275 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 AQP7P3A6NL99 342 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 KCNAB3O43448 404 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 SCN2BO60939 215 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 IGLV1-44P01699 117 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 ADRA2AP08913 450 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 OR12D1P0DN82 309 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 CXCR1P25024 350 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 TACR3P29371 465 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 THBS4P35443 961 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 POU3F1Q03052 451 aaPredicted RBP14.65□□□□□ -0.06
VPS29-204ENST00000548259 CEACAM7Q14002 265 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 OR7A5Q15622 319 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 TRIP10Q15642 601 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 GPAT3Q53EU6 434 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 C6orf136Q5SQH8 315 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 AP1ARQ63HQ0 302 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 PEG10Q86TG7 708 aaKnown RBP14.65□□□□□ -0.06
VPS29-204ENST00000548259 VPS37AQ8NEZ2 397 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 OR51F2Q8NH61 342 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 BCL2L2Q92843 193 aaPredicted RBP14.65□□□□□ -0.06
VPS29-204ENST00000548259 ZNF385AQ96PM9 386 aaKnown RBP14.65□□□□□ -0.06
VPS29-204ENST00000548259 MS4A5Q9H3V2 200 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 SERHL2Q9H4I8 314 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 USP22Q9UPT9 525 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 CMAHPQ9Y471 501 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 SPEF1Q9Y4P9 236 aa14.65□□□□□ -0.06
VPS29-204ENST00000548259 FAAHO00519 579 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 RNASET2O00584 256 aaKnown RBP14.64□□□□□ -0.07
VPS29-204ENST00000548259 AKR7A3O95154 331 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 IGKV3-15P01624 115 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 MSMBP08118 114 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 ANPEPP15144 967 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 CBR1P16152 277 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 ARR3P36575 388 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 GPR6P46095 362 aaPredicted RBP14.64□□□□□ -0.07
VPS29-204ENST00000548259 HILS1P60008 231 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 GSTA3Q16772 222 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 SLC9B1Q4ZJI4 515 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 OLIG3Q7RTU3 272 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 CCDC36Q8IYA8 594 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 ZCCHC24Q8N2G6 241 aaKnown RBP14.64□□□□□ -0.07
VPS29-204ENST00000548259 TMEM99Q8N816 258 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 ZIC4Q8N9L1 334 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 OR4A15Q8NGL6 344 aa14.64□□□□□ -0.07
VPS29-204ENST00000548259 ALKBH3Q96Q83 286 aaPredicted RBP14.64□□□□□ -0.07
VPS29-204ENST00000548259 A0A096LPE4 126 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 A0A1W2PPZ6 126 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 CFAP73A6NFT4 308 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 LIPT2A6NK58 231 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 TMEM233B4DJY2 109 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 SYNGR3O43761 229 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 NPHS1O60500 1241 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 SAGP10523 405 aaPredicted RBP14.63□□□□□ -0.07
VPS29-204ENST00000548259 UQCRC2P22695 453 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 CALCRP30988 508 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 EVX1P49640 407 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 ANXA11P50995 505 aaKnown RBP14.63□□□□□ -0.07
VPS29-204ENST00000548259 HGFACQ04756 655 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 DAG1Q14118 895 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 XKR7Q5GH72 579 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 NIPAL3Q6P499 406 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 TNFAIP8L2Q6P589 184 aaPredicted RBP14.63□□□□□ -0.07
VPS29-204ENST00000548259 FRRS1Q6ZNA5 592 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 RIMKLAQ8IXN7 391 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 IFT20Q8IY31 132 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 ZNF440Q8IYI8 595 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 NOA1Q8NC60 698 aaKnown RBP14.63□□□□□ -0.07
VPS29-204ENST00000548259 ANKK1Q8NFD2 765 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 CNOT9Q92600 299 aaKnown RBP14.63□□□□□ -0.07
VPS29-204ENST00000548259 TUBGCP3Q96CW5 907 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 LRRC37BQ96QE4 947 aa14.63□□□□□ -0.07
VPS29-204ENST00000548259 SUCNR1Q9BXA5 334 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms