RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 NUDCD3Q8IVD9 361 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 VSTM4Q8IW00 320 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 UBE2J2Q8N2K1 259 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 NECAB1Q8N987 351 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 DCAF4L2Q8NA75 395 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 BHLHE23Q8NDY6 225 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 FAM83FQ8NEG4 500 aaPredicted RBP1.9□□□□□ -2.11
CD44-238ENST00000534296 OR4K14Q8NGD5 310 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 OR51S1Q8NGJ8 323 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 OR52M1Q8NGK5 317 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 OR2T3Q8NH03 318 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 BRSK1Q8TDC3 778 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 UFD1Q92890 307 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 EMG1Q92979 244 aaKnown RBP1.9□□□□□ -2.11
CD44-238ENST00000534296 PAGE5Q96GU1 130 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 TMEM101Q96IK0 257 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 ZNF641Q96N77 438 aaPredicted RBP1.9□□□□□ -2.11
CD44-238ENST00000534296 SECISBP2Q96T21 854 aaKnown RBP1.9□□□□□ -2.11
CD44-238ENST00000534296 RNF2Q99496 336 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 P2RY13Q9BPV8 354 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 ECSITQ9BQ95 431 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 HES7Q9BYE0 225 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 GCOM2Q9BZD3 368 aaPredicted RBP1.9□□□□□ -2.11
CD44-238ENST00000534296 GBA3Q9H227 469 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 OR51J1Q9H342 316 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 GORASP2Q9H8Y8 452 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 SIAEQ9HAT2 523 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 SGK2Q9HBY8 427 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 MYOZ2Q9NPC6 264 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 GLRX2Q9NS18 164 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 B3GNT2Q9NY97 397 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 PIGLQ9Y2B2 252 aa1.9□□□□□ -2.11
CD44-238ENST00000534296 COL16A1Q07092 1604 aaPredicted RBP1.9□□□□□ -2.11
CD44-238ENST00000534296 RAI1Q7Z5J4 1906 aaPredicted RBP1.89□□□□□ -2.11
CD44-238ENST00000534296 TRAV26-1A0A087WT03 109 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 IGHV1OR21-1A0A087WYE8 117 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 FAM240BA0A1B0GVZ2 78 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 A8MUA0 341 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 LOC110117498-PIK3R3F6TDL0 507 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 PRRG1O14668 218 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 RIPK2O43353 540 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 MBTPS2O43462 519 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 SUPT7LO94864 414 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 OPN1MWP04001 364 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 OPN1MW2P0DN77 364 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 OPN1MW3P0DN78 364 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 FUT3P21217 361 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 MMP11P24347 488 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 MAGEA8P43361 318 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 VDAC2P45880 294 aaPredicted RBP1.89□□□□□ -2.11
CD44-238ENST00000534296 CCT3P49368 545 aaKnown RBP1.89□□□□□ -2.11
CD44-238ENST00000534296 ATP1B3P54709 279 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 ATP5IP56385 69 aaPredicted RBP1.89□□□□□ -2.11
CD44-238ENST00000534296 RIPPLY3P57055 190 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 TGFBR3Q03167 851 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 PLD1Q13393 1074 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 PRPSAP1Q14558 356 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 HERPUD1Q15011 391 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 OXA1LQ15070 435 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 PPP1R7Q15435 360 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 ATP6AP1Q15904 470 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 SSX2Q16385 188 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 NRF1Q16656 503 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 PDZK1Q5T2W1 519 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 OR4F3Q6IEY1 312 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 ZNF530Q6P9A1 599 aaPredicted RBP1.89□□□□□ -2.11
CD44-238ENST00000534296 KDELC1Q6UW63 502 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 CCDC73Q6ZRK6 1079 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 KRTAP5-2Q701N4 177 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 ECHDC2Q86YB7 292 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 CEP112Q8N8E3 955 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 OR10G3Q8NGC4 313 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 OR6C4Q8NGE1 309 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 OR9G1Q8NH87 305 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 ZNF606Q8WXB4 792 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 UBE2E3Q969T4 207 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 TECTBQ96PL2 329 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 KCNA7Q96RP8 456 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 PLIN2Q99541 437 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 TSG101Q99816 390 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 RASL11BQ9BPW5 248 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 KLHDC3Q9BQ90 382 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 NT5C3AQ9H0P0 336 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 RANBP3Q9H6Z4 567 aaPredicted RBP1.89□□□□□ -2.11
CD44-238ENST00000534296 SUDS3Q9H7L9 328 aaPredicted RBP1.89□□□□□ -2.11
CD44-238ENST00000534296 MCCC2Q9HCC0 563 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 RAB18Q9NP72 206 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 IL26Q9NPH9 171 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 PLSCR3Q9NRY6 295 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 SAMSN1Q9NSI8 373 aaKnown RBP1.89□□□□□ -2.11
CD44-238ENST00000534296 SMPD3Q9NY59 655 aaPredicted RBP1.89□□□□□ -2.11
CD44-238ENST00000534296 EXTL2Q9UBQ6 330 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 STAP1Q9ULZ2 295 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 ERVW-1Q9UQF0 538 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 MEMO1Q9Y316 297 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 USP16Q9Y5T5 823 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 NPTNQ9Y639 398 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 PTCH1Q13635 1447 aa1.89□□□□□ -2.11
CD44-238ENST00000534296 TDRD6O60522 2096 aaKnown RBP1.89□□□□□ -2.11
CD44-238ENST00000534296 FANCIQ9NVI1 1328 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms