RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 WIPI1Q5MNZ9 446 aaPredicted RBP8.25□□□□□ -1.09
VPS53-203ENST00000401468 C1orf146Q5VVC0 180 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 MTFR2Q6P444 385 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 ARHGAP11AQ6P4F7 1023 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 GDF7Q7Z4P5 450 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 ADGRE4PQ86SQ3 457 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 GGNQ86UU5 652 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 PIK3C3Q8NEB9 887 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 OR14L1PQ8NHC6 308 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 ADAMTS16Q8TE57 1224 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 CANT1Q8WVQ1 401 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 SLC47A1Q96FL8 570 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 ADGRG7Q96K78 797 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 LRGUKQ96M69 825 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 MCHR1Q99705 422 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 VKORC1Q9BQB6 163 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 PRSS27Q9BQR3 290 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 PRDM14Q9GZV8 571 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 ANKRD19PQ9H560 264 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 CTPS2Q9NRF8 586 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 ARMC1Q9NVT9 282 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 OSGIN1Q9UJX0 560 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 VDAC3Q9Y277 283 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 SLC6A5Q9Y345 797 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 ZNF337Q9Y3M9 751 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 ABCA4P78363 2273 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 IGKV1D-42A0A075B6H8 117 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 A0A0G2JNJ9 132 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 FAM47E-STBD1D6RA91 191 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 ADAMDEC1O15204 470 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 CIB2O75838 187 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 TRAPPC6AO75865 159 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 CYP7B1O75881 506 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 STAMBPO95630 424 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 FABP3P05413 133 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 GLI4P10075 376 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 PNMTP11086 282 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 PEPDP12955 493 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 ZNF708P17019 499 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 ITGA2P17301 1181 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 BMP7P18075 431 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 IL11P20809 199 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 TACR3P29371 465 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 SLC7A1P30825 629 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 RYKP34925 604 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 RBM34P42696 430 aaKnown RBP8.24□□□□□ -1.09
VPS53-203ENST00000401468 CCR4P51679 360 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 CDH12P55289 794 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 CLDN18P56856 261 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 COPZ1P61923 177 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 EGR4Q05215 589 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 MERTKQ12866 999 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 GK3PQ14409 553 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 SWI5Q1ZZU3 235 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 FAM98BQ52LJ0 330 aaKnown RBP8.24□□□□□ -1.09
VPS53-203ENST00000401468 DCST1Q5T197 706 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 C3orf33Q6P1S2 294 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 AAGABQ6PD74 315 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 C5orf46Q6UWT4 87 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 WDR88Q6ZMY6 472 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 FKBP9P1Q75LS8 142 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 YRDCQ86U90 279 aaKnown RBP8.24□□□□□ -1.09
VPS53-203ENST00000401468 ZDHHC21Q8IVQ6 265 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 OR6S1Q8NH40 331 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 ZNF563Q8TA94 476 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 VANGL1Q8TAA9 524 aaPredicted RBP8.24□□□□□ -1.09
VPS53-203ENST00000401468 SLC25A43Q8WUT9 341 aaPredicted RBP8.24□□□□□ -1.09
VPS53-203ENST00000401468 WFDC12Q8WWY7 111 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 MPP4Q96JB8 637 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 ZNF347Q96SE7 839 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 TMEM43Q9BTV4 400 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 SLC19A3Q9BZV2 496 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 TP63Q9H3D4 680 aaPredicted RBP8.24□□□□□ -1.09
VPS53-203ENST00000401468 DENND2DQ9H6A0 471 aaPredicted RBP8.24□□□□□ -1.09
VPS53-203ENST00000401468 TMEM27Q9HBJ8 222 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 CHST11Q9NPF2 352 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 COQ3Q9NZJ6 369 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 Q9UFV3 132 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 CHRNA9Q9UGM1 479 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 RIMS3Q9UJD0 308 aa8.24□□□□□ -1.09
VPS53-203ENST00000401468 TMED7-TICAM2A0A0A6YYA0 188 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 HTR3EA5X5Y0 456 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 CPSF4LA6NMK7 179 aaKnown RBP8.23□□□□□ -1.09
VPS53-203ENST00000401468 J3KTA2 159 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 J3QW42 95 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 BCKDKO14874 412 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 GMFGO60234 142 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 TOXO94900 526 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 NUDT14O95848 222 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 GHRHP01286 108 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 FUT4P22083 530 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 ACVR2AP27037 513 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 CHRNB3Q05901 458 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 ST3GAL3Q11203 375 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 PIN1Q13526 163 aaPredicted RBP8.23□□□□□ -1.09
VPS53-203ENST00000401468 KPNB1Q14974 876 aaKnown RBP8.23□□□□□ -1.09
VPS53-203ENST00000401468 ALG10BQ5I7T1 473 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 RAET1LQ5VY80 246 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 DEF8Q6ZN54 512 aa8.23□□□□□ -1.09
VPS53-203ENST00000401468 SPATA24Q86W54 205 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms