RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	DAS1	P47005	663 aa		4.26	□□□□□ -1.73
UBX4	YMR067C	TAD1	P53065	400 aa		4.26	□□□□□ -1.73
UBX4	YMR067C	YDR514C	Q04408	483 aa		4.26	□□□□□ -1.73
UBX4	YMR067C	NSE3	Q05541	303 aa		4.26	□□□□□ -1.73
UBX4	YMR067C	FRE5	Q08908	694 aa		4.26	□□□□□ -1.73
UBX4	YMR067C	THI21	Q08975	551 aa		4.26	□□□□□ -1.73
UBX4	YMR067C	PRP4	P20053	465 aa	Known RBP	4.25	□□□□□ -1.73
UBX4	YMR067C	SAP190	P36123	1033 aa		4.25	□□□□□ -1.73
UBX4	YMR067C	SIC1	P38634	284 aa		4.25	□□□□□ -1.73
UBX4	YMR067C	AMA1	P50082	593 aa		4.25	□□□□□ -1.73
UBX4	YMR067C	RTA1	P53047	317 aa		4.25	□□□□□ -1.73
UBX4	YMR067C	MUS81	Q04149	632 aa	Predicted RBP	4.25	□□□□□ -1.73
UBX4	YMR067C	ADY4	Q05955	493 aa		4.25	□□□□□ -1.73
UBX4	YMR067C	RSC3	Q06639	885 aa		4.25	□□□□□ -1.73
UBX4	YMR067C	CDC53	Q12018	815 aa	Known RBP	4.25	□□□□□ -1.73
UBX4	YMR067C	TRM13	Q12383	476 aa		4.25	□□□□□ -1.73
UBX4	YMR067C	SPC29	P33419	253 aa		4.24	□□□□□ -1.73
UBX4	YMR067C	CHZ1	P40019	153 aa	Predicted RBP	4.24	□□□□□ -1.73
UBX4	YMR067C	FKH2	P41813	862 aa		4.24	□□□□□ -1.73
UBX4	YMR067C	STU2	P46675	888 aa		4.24	□□□□□ -1.73
UBX4	YMR067C	SSY5	P47002	699 aa		4.24	□□□□□ -1.73
UBX4	YMR067C	ZDS1	P50111	915 aa	Known RBP	4.24	□□□□□ -1.73
UBX4	YMR067C	LRS4	Q04087	347 aa	Known RBP	4.24	□□□□□ -1.73
UBX4	YMR067C	MET7	Q08645	548 aa		4.24	□□□□□ -1.73
UBX4	YMR067C	YLR415C	O13578	112 aa		4.23	□□□□□ -1.73
UBX4	YMR067C	YCL002C	P25565	263 aa		4.23	□□□□□ -1.73
UBX4	YMR067C	YBR053C	P38235	358 aa		4.23	□□□□□ -1.73
UBX4	YMR067C	YHL017W	P38745	532 aa		4.23	□□□□□ -1.73
UBX4	YMR067C	RLP7	P40693	322 aa	Known RBP	4.23	□□□□□ -1.73
UBX4	YMR067C	PFA3	P42836	336 aa		4.23	□□□□□ -1.73
UBX4	YMR067C	QRI1	P43123	477 aa	Known RBP	4.23	□□□□□ -1.73
UBX4	YMR067C	STB4	P50104	949 aa		4.23	□□□□□ -1.73
UBX4	YMR067C	MRPS35	P53292	345 aa		4.23	□□□□□ -1.73
UBX4	YMR067C	TMN2	Q04562	672 aa		4.23	□□□□□ -1.73
UBX4	YMR067C	HBT1	Q07653	1046 aa	Known RBP	4.23	□□□□□ -1.73
UBX4	YMR067C	YBR182C-A	Q8TGU6	64 aa		4.23	□□□□□ -1.73
UBX4	YMR067C	SAK1	P38990	1142 aa		4.22	□□□□□ -1.73
UBX4	YMR067C	MUP1	P50276	574 aa		4.22	□□□□□ -1.73
UBX4	YMR067C	NRG1	Q03125	231 aa		4.22	□□□□□ -1.73
UBX4	YMR067C	YOR131C	Q12486	218 aa		4.22	□□□□□ -1.73
UBX4	YMR067C	ATG11	Q12527	1178 aa		4.22	□□□□□ -1.73
UBX4	YMR067C	DIF1	O13577	133 aa		4.21	□□□□□ -1.74
UBX4	YMR067C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
UBX4	YMR067C	LAT1	P12695	482 aa	Known RBP	4.21	□□□□□ -1.74
UBX4	YMR067C	ECM1	P39715	212 aa		4.21	□□□□□ -1.74
UBX4	YMR067C	YIR042C	P40586	236 aa		4.21	□□□□□ -1.74
UBX4	YMR067C	SHR5	P41912	237 aa		4.21	□□□□□ -1.74
UBX4	YMR067C	YJL163C	P46996	555 aa		4.21	□□□□□ -1.74
UBX4	YMR067C	HXT16	P47185	567 aa		4.21	□□□□□ -1.74
UBX4	YMR067C	ZIP2	P53061	704 aa		4.21	□□□□□ -1.74
UBX4	YMR067C	GPR1	Q12361	961 aa		4.21	□□□□□ -1.74
UBX4	YMR067C	YOL098C	Q12496	1037 aa		4.21	□□□□□ -1.74
UBX4	YMR067C	YBR259W	P38338	688 aa		4.2	□□□□□ -1.74
UBX4	YMR067C	RIA1	P53893	1110 aa		4.2	□□□□□ -1.74
UBX4	YMR067C	MUK1	Q02866	612 aa		4.2	□□□□□ -1.74
UBX4	YMR067C	YMR206W	Q03695	313 aa		4.2	□□□□□ -1.74
UBX4	YMR067C	IRC10	Q08118	586 aa		4.2	□□□□□ -1.74
UBX4	YMR067C	PPS1	P38148	807 aa		4.19	□□□□□ -1.74
UBX4	YMR067C	GDH3	P39708	457 aa		4.19	□□□□□ -1.74
UBX4	YMR067C	SDS3	P40505	327 aa		4.19	□□□□□ -1.74
UBX4	YMR067C	MTR3	P48240	250 aa	Predicted RBP	4.19	□□□□□ -1.74
UBX4	YMR067C	HSV2	P50079	448 aa	Predicted RBP	4.19	□□□□□ -1.74
UBX4	YMR067C	RPN4	Q03465	531 aa		4.19	□□□□□ -1.74
UBX4	YMR067C	CRR1	Q05790	422 aa		4.19	□□□□□ -1.74
UBX4	YMR067C	MTH1	P35198	433 aa		4.18	□□□□□ -1.74
UBX4	YMR067C	YPT53	P36019	220 aa		4.18	□□□□□ -1.74
UBX4	YMR067C	TY4A-J	P47023	414 aa		4.18	□□□□□ -1.74
UBX4	YMR067C	ALY2	P47029	1046 aa		4.18	□□□□□ -1.74
UBX4	YMR067C	SRP40	P32583	406 aa	Predicted RBP	4.17	□□□□□ -1.74
UBX4	YMR067C	FMP52	P40008	231 aa		4.17	□□□□□ -1.74
UBX4	YMR067C	SGO1	Q08490	590 aa		4.17	□□□□□ -1.74
UBX4	YMR067C	TGL5	Q12043	749 aa		4.17	□□□□□ -1.74
UBX4	YMR067C	PER1	P25625	357 aa		4.16	□□□□□ -1.74
UBX4	YMR067C	MTC2	P34246	357 aa		4.16	□□□□□ -1.74
UBX4	YMR067C	SPC42	P36094	363 aa		4.16	□□□□□ -1.74
UBX4	YMR067C	OCA5	P38738	679 aa		4.16	□□□□□ -1.74
UBX4	YMR067C	BAP3	P41815	604 aa		4.16	□□□□□ -1.74
UBX4	YMR067C	YBP2	P53169	641 aa		4.16	□□□□□ -1.74
UBX4	YMR067C	GND2	P53319	492 aa		4.16	□□□□□ -1.74
UBX4	YMR067C	MCD4	P36051	919 aa		4.15	□□□□□ -1.75
UBX4	YMR067C	HOS4	P40480	1083 aa		4.15	□□□□□ -1.75
UBX4	YMR067C	TEL2	P53038	688 aa		4.15	□□□□□ -1.75
UBX4	YMR067C	MAL11	P53048	616 aa		4.15	□□□□□ -1.75
UBX4	YMR067C	YAP1802	P53309	568 aa		4.15	□□□□□ -1.75
UBX4	YMR067C	GAD1	Q04792	585 aa		4.15	□□□□□ -1.75
UBX4	YMR067C	YDR338C	Q05497	695 aa		4.15	□□□□□ -1.75
UBX4	YMR067C	IRC13	Q08630	104 aa		4.15	□□□□□ -1.75
UBX4	YMR067C	MDM12	Q92328	271 aa		4.15	□□□□□ -1.75
UBX4	YMR067C	GSY1	P23337	708 aa		4.14	□□□□□ -1.75
UBX4	YMR067C	YKL091C	P33324	310 aa	Known RBP	4.14	□□□□□ -1.75
UBX4	YMR067C	STO1	P34160	861 aa	Known RBP	4.14	□□□□□ -1.75
UBX4	YMR067C	BCD1	P38772	366 aa		4.14	□□□□□ -1.75
UBX4	YMR067C	BNA2	P47125	453 aa		4.14	□□□□□ -1.75
UBX4	YMR067C	PRP31	P49704	494 aa	Predicted RBP	4.14	□□□□□ -1.75
UBX4	YMR067C	UBC11	P52492	156 aa		4.14	□□□□□ -1.75
UBX4	YMR067C	TEX1	P53851	422 aa	Known RBP	4.14	□□□□□ -1.75
UBX4	YMR067C	YLR125W	Q12138	136 aa		4.14	□□□□□ -1.75
UBX4	YMR067C	ERR1	P0CX10	437 aa		4.13	□□□□□ -1.75
UBX4	YMR067C	ERR2	P0CX11	437 aa		4.13	□□□□□ -1.75
UBX4	YMR067C	TIM23	P32897	222 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 48.6 ms