RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 CHAMP1Q96JM3 812 aa12.82□□□□□ -0.36
FAM3A-221ENST00000612856 CDC5LQ99459 802 aaKnown RBP12.82□□□□□ -0.36
FAM3A-221ENST00000612856 ST5P78524 1137 aa12.82□□□□□ -0.36
FAM3A-221ENST00000612856 KRT27Q7Z3Y8 459 aa12.82□□□□□ -0.36
FAM3A-221ENST00000612856 CNBD1Q8NA66 436 aa12.82□□□□□ -0.36
FAM3A-221ENST00000612856 LINS1Q8NG48 757 aa12.82□□□□□ -0.36
FAM3A-221ENST00000612856 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.82□□□□□ -0.368e-8■■■■□ 25
FAM3A-221ENST00000612856 SMC3Q9UQE7 1217 aa12.82□□□□□ -0.36
FAM3A-221ENST00000612856 PSDA5PKW4 1024 aaPredicted RBP12.81□□□□□ -0.36
FAM3A-221ENST00000612856 MYCNP04198 464 aaPredicted RBP12.81□□□□□ -0.36
FAM3A-221ENST00000612856 NUCB1Q02818 461 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 PRPF40BQ6NWY9 871 aaKnown RBP12.81□□□□□ -0.36
FAM3A-221ENST00000612856 JAKMIP1Q96N16 626 aaKnown RBP12.81□□□□□ -0.36
FAM3A-221ENST00000612856 CYP27B1O15528 508 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 NUCB2P80303 420 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 RHPN1Q8TCX5 695 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 LRRC2Q9BYS8 371 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 TTC12Q9H892 705 aaPredicted RBP12.81□□□□□ -0.36
FAM3A-221ENST00000612856 AATKQ6ZMQ8 1374 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 ZNF853P0CG23 659 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 BAG6P46379 1132 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 EIF4A1P60842 406 aaKnown RBP12.81□□□□□ -0.36
FAM3A-221ENST00000612856 CCDC144CPQ8IYA2 1237 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 MIGA1Q8NAN2 632 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 CLEC11AQ9Y240 323 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 SHPRHQ149N8 1683 aa12.81□□□□□ -0.36
FAM3A-221ENST00000612856 ZBTB22O15209 634 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 RANBP6O60518 1105 aaKnown RBP12.8□□□□□ -0.36
FAM3A-221ENST00000612856 POLR3DP05423 398 aaPredicted RBP12.8□□□□□ -0.36
FAM3A-221ENST00000612856 KLHL40Q2TBA0 621 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 SIRT2Q8IXJ6 389 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 SMC5Q8IY18 1101 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 SRP68Q9UHB9 627 aaKnown RBP12.8□□□□□ -0.36
FAM3A-221ENST00000612856 GJA3Q9Y6H8 435 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 HMGN5P82970 282 aaKnown RBP12.8□□□□□ -0.36
FAM3A-221ENST00000612856 PICALMQ13492 652 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 CCDC152Q4G0S7 254 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 USPL1Q5W0Q7 1092 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 SYAP1Q96A49 352 aaPredicted RBP12.8□□□□□ -0.36
FAM3A-221ENST00000612856 CIZ1Q9ULV3 898 aaPredicted RBP12.8□□□□□ -0.36
FAM3A-221ENST00000612856 COL3A1P02461 1466 aaPredicted RBP12.8□□□□□ -0.36
FAM3A-221ENST00000612856 TRIM29Q14134 588 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 ATP2B3Q16720 1220 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 CRACR2BQ8N4Y2 399 aaPredicted RBP12.8□□□□□ -0.36
FAM3A-221ENST00000612856 PIGBQ92521 554 aa12.8□□□□□ -0.36
FAM3A-221ENST00000612856 ZC3H12CQ9C0D7 883 aaKnown RBP12.8□□□□□ -0.36
FAM3A-221ENST00000612856 GIGYF1O75420 1035 aaPredicted RBP12.79□□□□□ -0.36
FAM3A-221ENST00000612856 PRKG1Q13976 671 aa12.79□□□□□ -0.36
FAM3A-221ENST00000612856 CCDC87Q9NVE4 849 aa12.79□□□□□ -0.36
FAM3A-221ENST00000612856 NOL7Q9UMY1 257 aaKnown RBP12.79□□□□□ -0.36
FAM3A-221ENST00000612856 BCS1LQ9Y276 419 aa12.79□□□□□ -0.36
FAM3A-221ENST00000612856 FERMT3Q86UX7 667 aa12.79□□□□□ -0.36
FAM3A-221ENST00000612856 UNC5CLQ8IV45 518 aa12.79□□□□□ -0.36
FAM3A-221ENST00000612856 GDPD2Q9HCC8 539 aa12.79□□□□□ -0.36
FAM3A-221ENST00000612856 USP25Q9UHP3 1055 aa12.79□□□□□ -0.36
FAM3A-221ENST00000612856 SLC5A1P13866 664 aa12.79□□□□□ -0.36
FAM3A-221ENST00000612856 POLD1P28340 1107 aa12.79□□□□□ -0.36
FAM3A-221ENST00000612856 ZNF526Q8TF50 670 aaPredicted RBP12.79□□□□□ -0.36
FAM3A-221ENST00000612856 TCEAL9Q9UHQ7 104 aa12.79□□□□□ -0.36
FAM3A-221ENST00000612856 WDR17Q8IZU2 1322 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 ZBTB7AO95365 584 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 RAB3GAP1Q15042 981 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 VEZTQ9HBM0 779 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 PTPRCP08575 1304 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 CDK12Q9NYV4 1490 aaPredicted RBP12.78□□□□□ -0.36
FAM3A-221ENST00000612856 GLRX3O76003 335 aaKnown RBP12.78□□□□□ -0.36
FAM3A-221ENST00000612856 U2AF2P26368 475 aaKnown RBP eCLIP12.78□□□□□ -0.36
FAM3A-221ENST00000612856 TBC1D9Q6ZT07 1266 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 EDC3Q96F86 508 aaKnown RBP12.78□□□□□ -0.36
FAM3A-221ENST00000612856 CARD10Q9BWT7 1032 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 NACAP1Q9BZK3 213 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 KIF13AQ9H1H9 1805 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.78□□□□□ -0.36
FAM3A-221ENST00000612856 PNMA6EA0A0J9YXQ4 647 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 SNAP23O00161 211 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 GUCY1B3Q02153 619 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 TFCP2Q12800 502 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 MKNK2Q9HBH9 465 aa12.78□□□□□ -0.36
FAM3A-221ENST00000612856 ARHGAP45Q92619 1136 aa12.77□□□□□ -0.36
FAM3A-221ENST00000612856 NAPBQ9H115 298 aa12.77□□□□□ -0.36
FAM3A-221ENST00000612856 TSPY26PQ9H489 355 aa12.77□□□□□ -0.36
FAM3A-221ENST00000612856 CEP85Q6P2H3 762 aa12.77□□□□□ -0.37
FAM3A-221ENST00000612856 SYNE4Q8N205 404 aa12.77□□□□□ -0.37
FAM3A-221ENST00000612856 ZNF408Q9H9D4 720 aa12.77□□□□□ -0.37
FAM3A-221ENST00000612856 AKAP2Q9Y2D5 859 aa12.77□□□□□ -0.37
FAM3A-221ENST00000612856 ECHDC1Q9NTX5 307 aa12.77□□□□□ -0.37
FAM3A-221ENST00000612856 TMOD2Q9NZR1 351 aa12.77□□□□□ -0.37
FAM3A-221ENST00000612856 EN1Q05925 392 aaPredicted RBP12.76□□□□□ -0.37
FAM3A-221ENST00000612856 DMTNQ08495 405 aa12.76□□□□□ -0.37
FAM3A-221ENST00000612856 CHST3Q7LGC8 479 aa12.76□□□□□ -0.37
FAM3A-221ENST00000612856 VAT1LQ9HCJ6 419 aa12.76□□□□□ -0.37
FAM3A-221ENST00000612856 SH3TC1Q8TE82 1336 aa12.76□□□□□ -0.37
FAM3A-221ENST00000612856 ITGA6P23229 1130 aa12.76□□□□□ -0.37
FAM3A-221ENST00000612856 DLC1Q96QB1 1528 aa12.76□□□□□ -0.37
FAM3A-221ENST00000612856 CASTP20810 708 aaKnown RBP12.76□□□□□ -0.37
FAM3A-221ENST00000612856 CRKLP46109 303 aaKnown RBP12.76□□□□□ -0.37
FAM3A-221ENST00000612856 BICD2Q8TD16 824 aa12.76□□□□□ -0.37
FAM3A-221ENST00000612856 MAP3K12Q12852 859 aa12.75□□□□□ -0.37
FAM3A-221ENST00000612856 NOC3LQ8WTT2 800 aaKnown RBP12.75□□□□□ -0.37
FAM3A-221ENST00000612856 PPP1R9BQ96SB3 815 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms