RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 CBX1P83916 185 aa16.66■□□□□ 0.26
COL6A1-207ENST00000612273 TOB2Q14106 344 aaPredicted RBP16.66■□□□□ 0.26
COL6A1-207ENST00000612273 ZNF592Q92610 1267 aa16.66■□□□□ 0.26
COL6A1-207ENST00000612273 DBNLQ9UJU6 430 aaKnown RBP16.66■□□□□ 0.26
COL6A1-207ENST00000612273 Q6ZUG5 572 aa16.66■□□□□ 0.26
COL6A1-207ENST00000612273 RAPGEF4Q8WZA2 1011 aa16.66■□□□□ 0.26
COL6A1-207ENST00000612273 NCOA5Q9HCD5 579 aaKnown RBP16.66■□□□□ 0.26
COL6A1-207ENST00000612273 SPDYE4A6NLX3 237 aa16.65■□□□□ 0.26
COL6A1-207ENST00000612273 RPS6KB1P23443 525 aa16.65■□□□□ 0.26
COL6A1-207ENST00000612273 DDX21Q9NR30 783 aaKnown RBP eCLIP16.65■□□□□ 0.26
COL6A1-207ENST00000612273 PIK3C2AO00443 1686 aa16.65■□□□□ 0.26
COL6A1-207ENST00000612273 PXDNQ92626 1479 aa16.65■□□□□ 0.26
COL6A1-207ENST00000612273 TIMM10P62072 90 aa16.65■□□□□ 0.26
COL6A1-207ENST00000612273 ZNF790Q6PG37 636 aa16.65■□□□□ 0.26
COL6A1-207ENST00000612273 KCNH5Q8NCM2 988 aa16.65■□□□□ 0.26
COL6A1-207ENST00000612273 A0A087WZG4 1122 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 MTX1Q13505 466 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 FUCA2Q9BTY2 467 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 MRVI1Q9Y6F6 885 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 AMOTQ4VCS5 1084 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 LEO1Q8WVC0 666 aaPredicted RBP16.64■□□□□ 0.25
COL6A1-207ENST00000612273 CBX8Q9HC52 389 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 UBR1Q8IWV7 1749 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 NEURL1BA8MQ27 555 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 GOLIM4O00461 696 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 HOXB7P09629 217 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 GCKRQ14397 625 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 HSP90AB3PQ58FF7 597 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 NEK1Q96PY6 1258 aa16.64■□□□□ 0.25
COL6A1-207ENST00000612273 TAF5LO75529 589 aa16.63■□□□□ 0.25
COL6A1-207ENST00000612273 ANKRD13DQ6ZTN6 518 aa16.63■□□□□ 0.25
COL6A1-207ENST00000612273 NWD1Q149M9 1564 aa16.63■□□□□ 0.25
COL6A1-207ENST00000612273 IGSF3O75054 1194 aa16.63■□□□□ 0.25
COL6A1-207ENST00000612273 PDIA6Q15084 440 aa16.63■□□□□ 0.25
COL6A1-207ENST00000612273 MYRIPQ8NFW9 859 aa16.63■□□□□ 0.25
COL6A1-207ENST00000612273 FAM200AQ8TCP9 573 aa16.63■□□□□ 0.25
COL6A1-207ENST00000612273 TM6SF1Q9BZW5 370 aa16.63■□□□□ 0.25
COL6A1-207ENST00000612273 SNRKQ9NRH2 765 aa16.63■□□□□ 0.25
COL6A1-207ENST00000612273 XRN1Q8IZH2 1706 aaKnown RBP16.63■□□□□ 0.25
COL6A1-207ENST00000612273 PDCP20941 246 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 ZNF165P49910 485 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 TTC5Q8N0Z6 440 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 TERF1P54274 439 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 APOBRQ0VD83 1088 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 LMBR1LQ6UX01 489 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 ARHGEF25Q86VW2 580 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 PGBD1Q96JS3 809 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 KIF3AQ9Y496 699 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 RIOK3O14730 519 aaKnown RBP16.62■□□□□ 0.25
COL6A1-207ENST00000612273 CYP21A2P08686 494 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 OTUD7BQ6GQQ9 843 aa16.62■□□□□ 0.25
COL6A1-207ENST00000612273 ARID5BQ14865 1188 aa16.61■□□□□ 0.25
COL6A1-207ENST00000612273 IL17RAQ96F46 866 aa16.61■□□□□ 0.25
COL6A1-207ENST00000612273 ZNF594Q96JF6 807 aaPredicted RBP16.61■□□□□ 0.25
COL6A1-207ENST00000612273 CHMP4AQ9BY43 222 aa16.61■□□□□ 0.25
COL6A1-207ENST00000612273 HAND2P61296 217 aa16.61■□□□□ 0.25
COL6A1-207ENST00000612273 CHAF1AQ13111 956 aaPredicted RBP16.61■□□□□ 0.25
COL6A1-207ENST00000612273 FILIP1Q7Z7B0 1213 aa16.61■□□□□ 0.25
COL6A1-207ENST00000612273 HIP1O00291 1037 aa16.6■□□□□ 0.25
COL6A1-207ENST00000612273 EPB41L2O43491 1005 aaKnown RBP16.6■□□□□ 0.25
COL6A1-207ENST00000612273 NAA30Q147X3 362 aaPredicted RBP16.6■□□□□ 0.25
COL6A1-207ENST00000612273 ANKLE2Q86XL3 938 aa16.6■□□□□ 0.25
COL6A1-207ENST00000612273 ZNF710Q8N1W2 664 aa16.6■□□□□ 0.25
COL6A1-207ENST00000612273 USP42Q9H9J4 1324 aaKnown RBP16.6■□□□□ 0.25
COL6A1-207ENST00000612273 FAM208AQ9UK61 1670 aaKnown RBP16.6■□□□□ 0.25
COL6A1-207ENST00000612273 TNNI3KQ59H18 835 aa16.6■□□□□ 0.25
COL6A1-207ENST00000612273 KIAA1524Q8TCG1 905 aa16.6■□□□□ 0.25
COL6A1-207ENST00000612273 GPHNQ9NQX3 736 aaPredicted RBP16.6■□□□□ 0.25
COL6A1-207ENST00000612273 HDAC5Q9UQL6 1122 aa16.6■□□□□ 0.25
COL6A1-207ENST00000612273 FPGT-TNNI3KV9GXZ4 949 aa16.6■□□□□ 0.25
COL6A1-207ENST00000612273 PPP4R3BQ5MIZ7 849 aa16.6■□□□□ 0.25
COL6A1-207ENST00000612273 KRT28Q7Z3Y7 464 aa16.6■□□□□ 0.25
COL6A1-207ENST00000612273 FMNL2Q96PY5 1086 aa16.6■□□□□ 0.25
COL6A1-207ENST00000612273 ZHX1Q9UKY1 873 aaPredicted RBP16.6■□□□□ 0.25
COL6A1-207ENST00000612273 GOLGA6L6A8MZA4 724 aa16.59■□□□□ 0.25
COL6A1-207ENST00000612273 SCAND2PQ9GZW5 306 aaPredicted RBP16.59■□□□□ 0.25
COL6A1-207ENST00000612273 TTLL5Q6EMB2 1281 aa16.59■□□□□ 0.25
COL6A1-207ENST00000612273 ZBTB3Q9H5J0 574 aa16.59■□□□□ 0.25
COL6A1-207ENST00000612273 BCL2L12Q9HB09 334 aa16.59■□□□□ 0.25
COL6A1-207ENST00000612273 PXDNLA1KZ92 1463 aa16.59■□□□□ 0.25
COL6A1-207ENST00000612273 FKBP4Q02790 459 aaKnown RBP eCLIP16.58■□□□□ 0.25
COL6A1-207ENST00000612273 PTPN12Q05209 780 aaKnown RBP16.58■□□□□ 0.25
COL6A1-207ENST00000612273 ANKRD1Q15327 319 aa16.58■□□□□ 0.25
COL6A1-207ENST00000612273 COL15A1P39059 1388 aa16.58■□□□□ 0.25
COL6A1-207ENST00000612273 SCRN1Q12765 414 aa16.58■□□□□ 0.24
COL6A1-207ENST00000612273 SYTL4Q96C24 671 aaPredicted RBP16.58■□□□□ 0.24
COL6A1-207ENST00000612273 NALCNQ8IZF0 1738 aa16.58■□□□□ 0.24
COL6A1-207ENST00000612273 FMN2Q9NZ56 1722 aa16.58■□□□□ 0.24
COL6A1-207ENST00000612273 NPHP1O15259 732 aa16.58■□□□□ 0.24
COL6A1-207ENST00000612273 GJB4Q9NTQ9 266 aa16.58■□□□□ 0.24
COL6A1-207ENST00000612273 ME1P48163 572 aa16.57■□□□□ 0.24
COL6A1-207ENST00000612273 ISM2Q6H9L7 571 aa16.57■□□□□ 0.24
COL6A1-207ENST00000612273 STOX1Q6ZVD7 989 aa16.57■□□□□ 0.24
COL6A1-207ENST00000612273 TRMT1Q9NXH9 659 aaKnown RBP16.57■□□□□ 0.24
COL6A1-207ENST00000612273 METTL22Q9BUU2 404 aaPredicted RBP16.57■□□□□ 0.24
COL6A1-207ENST00000612273 CLIP2Q9UDT6 1046 aa16.57■□□□□ 0.24
COL6A1-207ENST00000612273 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.57■□□□□ 0.24
COL6A1-207ENST00000612273 V9GYY5 206 aaPredicted RBP16.57■□□□□ 0.24
COL6A1-207ENST00000612273 TOPAZ1Q8N9V7 1692 aa16.57■□□□□ 0.24
COL6A1-207ENST00000612273 NPHP3Q7Z494 1330 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms