RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 MED1Q15648 1581 aaPredicted RBP7.39□□□□□ -1.23
VRK3-222ENST00000601324 UHRF1BP1Q6BDS2 1440 aa7.39□□□□□ -1.23
VRK3-222ENST00000601324 H7C1W4 665 aa7.39□□□□□ -1.23
VRK3-222ENST00000601324 ITGA6P23229 1130 aa7.39□□□□□ -1.23
VRK3-222ENST00000601324 EFHC2Q5JST6 749 aa7.39□□□□□ -1.23
VRK3-222ENST00000601324 LRRC69Q6ZNQ3 347 aa7.39□□□□□ -1.23
VRK3-222ENST00000601324 TRIM22Q8IYM9 498 aa7.39□□□□□ -1.23
VRK3-222ENST00000601324 KLRG1Q96E93 195 aa7.39□□□□□ -1.23
VRK3-222ENST00000601324 HSH2DQ96JZ2 352 aa7.39□□□□□ -1.23
VRK3-222ENST00000601324 GJA3Q9Y6H8 435 aa7.39□□□□□ -1.23
VRK3-222ENST00000601324 MPSTP25325 297 aa7.38□□□□□ -1.23
VRK3-222ENST00000601324 ETFBKMTQ8IXQ9 262 aa7.38□□□□□ -1.23
VRK3-222ENST00000601324 ZNF280CQ8ND82 737 aa7.38□□□□□ -1.23
VRK3-222ENST00000601324 GMCL1Q96IK5 515 aa7.38□□□□□ -1.23
VRK3-222ENST00000601324 CUEDC1Q9NWM3 386 aaPredicted RBP7.38□□□□□ -1.23
VRK3-222ENST00000601324 SETD1BQ9UPS6 1966 aaKnown RBP7.38□□□□□ -1.23
VRK3-222ENST00000601324 ATP10AO60312 1499 aa7.37□□□□□ -1.23
VRK3-222ENST00000601324 NUP153P49790 1475 aaKnown RBP7.37□□□□□ -1.23
VRK3-222ENST00000601324 PPFIA3O75145 1194 aa7.37□□□□□ -1.23
VRK3-222ENST00000601324 MLECQ14165 292 aa7.37□□□□□ -1.23
VRK3-222ENST00000601324 ECM1Q16610 540 aa7.37□□□□□ -1.23
VRK3-222ENST00000601324 NOM1Q5C9Z4 860 aaKnown RBP7.37□□□□□ -1.23
VRK3-222ENST00000601324 FAM26DQ5JW98 314 aa7.37□□□□□ -1.23
VRK3-222ENST00000601324 SAMD5Q5TGI4 173 aa7.37□□□□□ -1.23
VRK3-222ENST00000601324 ALKBH2Q6NS38 261 aa7.37□□□□□ -1.23
VRK3-222ENST00000601324 NUCKS1Q9H1E3 243 aaKnown RBP7.37□□□□□ -1.23
VRK3-222ENST00000601324 DMGDHQ9UI17 866 aaKnown RBP7.37□□□□□ -1.23
VRK3-222ENST00000601324 CTTNBP2Q8WZ74 1663 aa7.37□□□□□ -1.23
VRK3-222ENST00000601324 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.37□□□□□ -1.23
VRK3-222ENST00000601324 PRXQ9BXM0 1461 aa7.36□□□□□ -1.23
VRK3-222ENST00000601324 MICAL2O94851 1124 aa7.36□□□□□ -1.23
VRK3-222ENST00000601324 THBS1P07996 1170 aa7.36□□□□□ -1.23
VRK3-222ENST00000601324 EIF1AXP47813 144 aaKnown RBP7.36□□□□□ -1.23
VRK3-222ENST00000601324 ARHGAP4P98171 946 aa7.36□□□□□ -1.23
VRK3-222ENST00000601324 DBN1Q16643 649 aa7.36□□□□□ -1.23
VRK3-222ENST00000601324 ZNF787Q6DD87 383 aa7.36□□□□□ -1.23
VRK3-222ENST00000601324 FIGNL1Q6PIW4 674 aa7.36□□□□□ -1.23
VRK3-222ENST00000601324 BTLAQ7Z6A9 289 aa7.36□□□□□ -1.23
VRK3-222ENST00000601324 TREML1Q86YW5 311 aa7.36□□□□□ -1.23
VRK3-222ENST00000601324 BIN2Q9UBW5 565 aaPredicted RBP7.36□□□□□ -1.23
VRK3-222ENST00000601324 C9orf84Q5VXU9 1444 aa7.35□□□□□ -1.23
VRK3-222ENST00000601324 ZBTB39O15060 712 aa7.35□□□□□ -1.23
VRK3-222ENST00000601324 ZAP70P43403 619 aa7.35□□□□□ -1.23
VRK3-222ENST00000601324 UBAP2LQ14157 1087 aaKnown RBP7.35□□□□□ -1.23
VRK3-222ENST00000601324 TMCO4Q5TGY1 634 aa7.35□□□□□ -1.23
VRK3-222ENST00000601324 ZNF837Q96EG3 531 aaPredicted RBP7.35□□□□□ -1.23
VRK3-222ENST00000601324 ZCCHC2Q9C0B9 1178 aaKnown RBP7.35□□□□□ -1.23
VRK3-222ENST00000601324 ZNF335Q9H4Z2 1342 aaPredicted RBP7.34□□□□□ -1.23
VRK3-222ENST00000601324 FAM157BP0CG42 384 aa7.34□□□□□ -1.23
VRK3-222ENST00000601324 IDH3AP50213 366 aa7.34□□□□□ -1.23
VRK3-222ENST00000601324 TYRO3Q06418 890 aa7.34□□□□□ -1.23
VRK3-222ENST00000601324 NPAS3Q8IXF0 933 aa7.34□□□□□ -1.23
VRK3-222ENST00000601324 NXF1Q9UBU9 619 aaKnown RBP7.34□□□□□ -1.23
VRK3-222ENST00000601324 PCDHGC4Q9Y5F7 938 aa7.34□□□□□ -1.23
VRK3-222ENST00000601324 TRAPPC8Q9Y2L5 1435 aa7.34□□□□□ -1.23
VRK3-222ENST00000601324 RAPGEF6Q8TEU7 1601 aa7.34□□□□□ -1.24
VRK3-222ENST00000601324 SAMD9Q5K651 1589 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 UBAP1LF5GYI3 381 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 ATXN7O15265 892 aaPredicted RBP7.33□□□□□ -1.24
VRK3-222ENST00000601324 INPP5BP32019 993 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 HSPA1LP34931 641 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 ARSDP51689 593 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 NANOS1Q8WY41 292 aaKnown RBP7.33□□□□□ -1.24
VRK3-222ENST00000601324 CEP63Q96MT8 703 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 FAM13BQ9NYF5 915 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 PODXL2Q9NZ53 605 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 ALKQ9UM73 1620 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 SCAPERQ9BY12 1400 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 CFAP74Q9C0B2 1584 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 REREQ9P2R6 1566 aa7.33□□□□□ -1.24
VRK3-222ENST00000601324 C3P01024 1663 aa7.32□□□□□ -1.24
VRK3-222ENST00000601324 EFSO43281 561 aa7.32□□□□□ -1.24
VRK3-222ENST00000601324 FZD6O60353 706 aa7.32□□□□□ -1.24
VRK3-222ENST00000601324 AAMPQ13685 434 aa7.32□□□□□ -1.24
VRK3-222ENST00000601324 CCDC27Q2M243 656 aa7.32□□□□□ -1.24
VRK3-222ENST00000601324 ATCAYQ86WG3 371 aa7.32□□□□□ -1.24
VRK3-222ENST00000601324 GTPBP3Q969Y2 492 aaKnown RBP7.32□□□□□ -1.24
VRK3-222ENST00000601324 NDFIP2Q9NV92 336 aa7.32□□□□□ -1.24
VRK3-222ENST00000601324 PLCH2O75038 1416 aa7.32□□□□□ -1.24
VRK3-222ENST00000601324 TCOF1Q13428 1488 aaKnown RBP7.31□□□□□ -1.24
VRK3-222ENST00000601324 CDC14CA4D256 554 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 OPLAHO14841 1288 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 NDUFB5O43674 189 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 EPB42P16452 691 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 KDM5CP41229 1560 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 FOXR1Q6PIV2 292 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 SV2AQ7L0J3 742 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 VWA5B2Q8N398 1253 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 BRD7Q9NPI1 651 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 RGS17Q9UGC6 210 aaPredicted RBP7.31□□□□□ -1.24
VRK3-222ENST00000601324 DCTN4Q9UJW0 460 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 BRPF3Q9ULD4 1205 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 AGLP35573 1532 aa7.31□□□□□ -1.24
VRK3-222ENST00000601324 DCDC2BA2VCK2 349 aa7.3□□□□□ -1.24
VRK3-222ENST00000601324 H3BM21 787 aa7.3□□□□□ -1.24
VRK3-222ENST00000601324 KHNYNO15037 678 aaKnown RBP7.3□□□□□ -1.24
VRK3-222ENST00000601324 BNIP3LO60238 219 aa7.3□□□□□ -1.24
VRK3-222ENST00000601324 MZF1P28698 734 aaPredicted RBP7.3□□□□□ -1.24
VRK3-222ENST00000601324 MARSP56192 900 aaKnown RBP7.3□□□□□ -1.24
VRK3-222ENST00000601324 KCNQ4P56696 695 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms