RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 OTOP1Q7RTM1 612 aa22.22■■□□□ 1.15
VPS53-218ENST00000575207 R3HDMLQ9H3Y0 253 aa22.22■■□□□ 1.15
VPS53-218ENST00000575207 TCERG1O14776 1098 aaKnown RBP22.21■■□□□ 1.15
VPS53-218ENST00000575207 TBC1D10BQ4KMP7 808 aaPredicted RBP22.21■■□□□ 1.15
VPS53-218ENST00000575207 CDCA5Q96FF9 252 aa22.21■■□□□ 1.15
VPS53-218ENST00000575207 FMNL2Q96PY5 1086 aa22.21■■□□□ 1.15
VPS53-218ENST00000575207 SULF1Q8IWU6 871 aa22.2■■□□□ 1.14
VPS53-218ENST00000575207 RBM17Q96I25 401 aaKnown RBP22.2■■□□□ 1.14
VPS53-218ENST00000575207 COL25A1Q9BXS0 654 aaPredicted RBP22.2■■□□□ 1.14
VPS53-218ENST00000575207 ATP6V0A2Q9Y487 856 aa22.2■■□□□ 1.14
VPS53-218ENST00000575207 YDJCA8MPS7 323 aa22.19■■□□□ 1.14
VPS53-218ENST00000575207 IL13P35225 146 aa22.19■■□□□ 1.14
VPS53-218ENST00000575207 NYXQ9GZU5 481 aa22.19■■□□□ 1.14
VPS53-218ENST00000575207 TMX4Q9H1E5 349 aaPredicted RBP22.19■■□□□ 1.14
VPS53-218ENST00000575207 PRO3102Q9H379 93 aa22.19■■□□□ 1.14
VPS53-218ENST00000575207 ZBTB12Q9Y330 459 aaPredicted RBP22.19■■□□□ 1.14
VPS53-218ENST00000575207 PRAMEF22A3QJZ6 481 aa22.18■■□□□ 1.14
VPS53-218ENST00000575207 PIP4K2AP48426 406 aaPredicted RBP22.18■■□□□ 1.14
VPS53-218ENST00000575207 MTHFSDQ2M296 383 aaKnown RBP22.18■■□□□ 1.14
VPS53-218ENST00000575207 NUTM1Q86Y26 1132 aa22.18■■□□□ 1.14
VPS53-218ENST00000575207 PTPN22Q9Y2R2 807 aa22.18■■□□□ 1.14
VPS53-218ENST00000575207 USP16Q9Y5T5 823 aa22.17■■□□□ 1.14
VPS53-218ENST00000575207 VCANP13611 3396 aa22.17■■□□□ 1.14
VPS53-218ENST00000575207 TMEM106CQ9BVX2 250 aa22.16■■□□□ 1.14
VPS53-218ENST00000575207 HLFQ16534 295 aa22.15■■□□□ 1.14
VPS53-218ENST00000575207 SREBF2Q12772 1141 aa22.14■■□□□ 1.13
VPS53-218ENST00000575207 GGA3Q9NZ52 723 aa22.14■■□□□ 1.13
VPS53-218ENST00000575207 RPS12P25398 132 aaKnown RBP22.13■■□□□ 1.13
VPS53-218ENST00000575207 RBM26Q5T8P6 1007 aaKnown RBP22.13■■□□□ 1.13
VPS53-218ENST00000575207 DPP8Q6V1X1 898 aaPredicted RBP22.13■■□□□ 1.13
VPS53-218ENST00000575207 PSMD14O00487 310 aa22.12■■□□□ 1.13
VPS53-218ENST00000575207 TEFQ10587 303 aa22.12■■□□□ 1.13
VPS53-218ENST00000575207 ALDH1A1P00352 501 aa22.11■■□□□ 1.13
VPS53-218ENST00000575207 ZNF333Q96JL9 665 aa22.11■■□□□ 1.13
VPS53-218ENST00000575207 KIF4BQ2VIQ3 1234 aa22.1■■□□□ 1.13
VPS53-218ENST00000575207 MOB2Q70IA6 237 aa22.1■■□□□ 1.13
VPS53-218ENST00000575207 MPNDQ8N594 471 aa22.1■■□□□ 1.13
VPS53-218ENST00000575207 IL17REQ8NFR9 667 aa22.1■■□□□ 1.13
VPS53-218ENST00000575207 IBTKQ9P2D0 1353 aaPredicted RBP22.1■■□□□ 1.13
VPS53-218ENST00000575207 ASTN2O75129 1339 aaPredicted RBP22.08■■□□□ 1.13
VPS53-218ENST00000575207 A0A1W2PPC1 479 aa22.08■■□□□ 1.13
VPS53-218ENST00000575207 NBPF26B4DH59 902 aa22.08■■□□□ 1.13
VPS53-218ENST00000575207 UBE2Q2LH0YL09 131 aa22.08■■□□□ 1.13
VPS53-218ENST00000575207 NBPF10Q6P3W6 841 aaKnown RBP22.08■■□□□ 1.13
VPS53-218ENST00000575207 C3orf67Q6ZVT6 689 aa22.08■■□□□ 1.13
VPS53-218ENST00000575207 SP8Q8IXZ3 490 aa22.08■■□□□ 1.13
VPS53-218ENST00000575207 SIPA1L3O60292 1781 aaPredicted RBP22.07■■□□□ 1.12
VPS53-218ENST00000575207 SOX1O00570 391 aaPredicted RBP22.07■■□□□ 1.12
VPS53-218ENST00000575207 KCNQ3O43525 872 aa22.07■■□□□ 1.12
VPS53-218ENST00000575207 SPTBN5Q9NRC6 3674 aaKnown RBP22.06■■□□□ 1.12
VPS53-218ENST00000575207 ERO1AQ96HE7 468 aa22.06■■□□□ 1.12
VPS53-218ENST00000575207 ZNF609O15014 1411 aa22.06■■□□□ 1.12
VPS53-218ENST00000575207 BBOX1O75936 387 aa22.05■■□□□ 1.12
VPS53-218ENST00000575207 ABCC4O15439 1325 aa22.05■■□□□ 1.12
VPS53-218ENST00000575207 HMOX1P09601 288 aa22.04■■□□□ 1.12
VPS53-218ENST00000575207 MKRN3Q13064 507 aaKnown RBP22.04■■□□□ 1.12
VPS53-218ENST00000575207 ANGEL2Q5VTE6 544 aaKnown RBP22.04■■□□□ 1.12
VPS53-218ENST00000575207 LRCH3Q96II8 777 aa22.04■■□□□ 1.12
VPS53-218ENST00000575207 STXBP5LQ9Y2K9 1186 aa22.04■■□□□ 1.12
VPS53-218ENST00000575207 EFCC1Q9HA90 598 aa22.03■■□□□ 1.12
VPS53-218ENST00000575207 PRDM6Q9NQX0 595 aa22.03■■□□□ 1.12
VPS53-218ENST00000575207 ERVV-1B6SEH8 477 aa22.02■■□□□ 1.12
VPS53-218ENST00000575207 SNRPA1P09661 255 aaKnown RBP22.02■■□□□ 1.12
VPS53-218ENST00000575207 SLC4A8Q2Y0W8 1093 aa22.02■■□□□ 1.12
VPS53-218ENST00000575207 DPF3Q92784 378 aa22.02■■□□□ 1.12
VPS53-218ENST00000575207 NLRP3Q96P20 1036 aa22.02■■□□□ 1.12
VPS53-218ENST00000575207 UBN2Q6ZU65 1347 aa22.02■■□□□ 1.12
VPS53-218ENST00000575207 SUSD4Q5VX71 490 aa22.01■■□□□ 1.11
VPS53-218ENST00000575207 GPR153Q6NV75 609 aa22.01■■□□□ 1.11
VPS53-218ENST00000575207 NBPF11Q86T75 865 aa22.01■■□□□ 1.11
VPS53-218ENST00000575207 CD99L2Q8TCZ2 262 aa22.01■■□□□ 1.11
VPS53-218ENST00000575207 BTBD11A6QL63 1104 aa22■■□□□ 1.11
VPS53-218ENST00000575207 INHBEP58166 350 aa22■■□□□ 1.11
VPS53-218ENST00000575207 SCARF1Q14162 830 aa22■■□□□ 1.11
VPS53-218ENST00000575207 ANKRD13DQ6ZTN6 518 aa22■■□□□ 1.11
VPS53-218ENST00000575207 RTL9Q8NET4 1388 aa21.99■■□□□ 1.11
VPS53-218ENST00000575207 DUOX1Q9NRD9 1551 aa21.99■■□□□ 1.11
VPS53-218ENST00000575207 GNAT3A8MTJ3 354 aa21.99■■□□□ 1.11
VPS53-218ENST00000575207 NTSR2O95665 410 aa21.99■■□□□ 1.11
VPS53-218ENST00000575207 IFNL1Q8IU54 200 aa21.99■■□□□ 1.11
VPS53-218ENST00000575207 DBNDD1Q9H9R9 158 aa21.99■■□□□ 1.11
VPS53-218ENST00000575207 CEMIPQ8WUJ3 1361 aa21.99■■□□□ 1.11
VPS53-218ENST00000575207 KDM3BQ7LBC6 1761 aa21.97■■□□□ 1.11
VPS53-218ENST00000575207 ZNF280AP59817 542 aaPredicted RBP21.97■■□□□ 1.11
VPS53-218ENST00000575207 CAP1Q01518 475 aa21.97■■□□□ 1.11
VPS53-218ENST00000575207 TCIRG1Q13488 830 aa21.97■■□□□ 1.11
VPS53-218ENST00000575207 SPRYD7Q5W111 196 aa21.97■■□□□ 1.11
VPS53-218ENST00000575207 KCNQ5Q9NR82 932 aa21.97■■□□□ 1.11
VPS53-218ENST00000575207 NUP98P52948 1817 aa21.96■■□□□ 1.11
VPS53-218ENST00000575207 WTIPA6NIX2 430 aaPredicted RBP21.96■■□□□ 1.11
VPS53-218ENST00000575207 VIL1P09327 827 aaKnown RBP21.96■■□□□ 1.11
VPS53-218ENST00000575207 WASHC4Q2M389 1173 aa21.96■■□□□ 1.11
VPS53-218ENST00000575207 SLC9C1Q4G0N8 1177 aa21.96■■□□□ 1.11
VPS53-218ENST00000575207 SLC10A5Q5PT55 438 aa21.96■■□□□ 1.11
VPS53-218ENST00000575207 NECTIN2Q92692 538 aa21.96■■□□□ 1.11
VPS53-218ENST00000575207 MANSC4A6NHS7 340 aaPredicted RBP21.95■■□□□ 1.1
VPS53-218ENST00000575207 GPTP24298 496 aa21.95■■□□□ 1.1
VPS53-218ENST00000575207 TTLL12Q14166 644 aaPredicted RBP21.95■■□□□ 1.1
VPS53-218ENST00000575207 MORC1Q86VD1 984 aa21.95■■□□□ 1.1
VPS53-218ENST00000575207 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms