RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FAM50AQ14320 339 aaKnown RBP8.69□□□□□ -1.02
VPS53-212ENST00000572259 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.69□□□□□ -1.02
VPS53-212ENST00000572259 WDR44Q5JSH3 913 aa8.69□□□□□ -1.02
VPS53-212ENST00000572259 SH3PXD2AQ5TCZ1 1133 aa8.69□□□□□ -1.02
VPS53-212ENST00000572259 C16orf46Q6P387 395 aa8.69□□□□□ -1.02
VPS53-212ENST00000572259 GGT6Q6P531 493 aa8.69□□□□□ -1.02
VPS53-212ENST00000572259 SND1Q7KZF4 910 aaKnown RBP eCLIP8.69□□□□□ -1.02
VPS53-212ENST00000572259 ALDH16A1Q8IZ83 802 aa8.69□□□□□ -1.02
VPS53-212ENST00000572259 SENP2Q9HC62 589 aa8.69□□□□□ -1.02
VPS53-212ENST00000572259 TIMMDC1Q9NPL8 285 aa8.69□□□□□ -1.02
VPS53-212ENST00000572259 DHX29Q7Z478 1369 aaKnown RBP8.69□□□□□ -1.02
VPS53-212ENST00000572259 MADDQ8WXG6 1647 aa8.69□□□□□ -1.02
VPS53-212ENST00000572259 RIMS1Q86UR5 1692 aaKnown RBP8.69□□□□□ -1.02
VPS53-212ENST00000572259 TATP17735 454 aaPredicted RBP8.68□□□□□ -1.02
VPS53-212ENST00000572259 BRD2P25440 801 aaKnown RBP8.68□□□□□ -1.02
VPS53-212ENST00000572259 HIRAP54198 1017 aaPredicted RBP8.68□□□□□ -1.02
VPS53-212ENST00000572259 ZNF295-AS1Q8N0V1 137 aa8.68□□□□□ -1.02
VPS53-212ENST00000572259 POLR3GLQ9BT43 218 aa8.68□□□□□ -1.02
VPS53-212ENST00000572259 PHACTR1Q9C0D0 580 aa8.68□□□□□ -1.02
VPS53-212ENST00000572259 ANO2Q9NQ90 1003 aa8.68□□□□□ -1.02
VPS53-212ENST00000572259 DACH1Q9UI36 760 aa8.68□□□□□ -1.02
VPS53-212ENST00000572259 FGD6Q6ZV73 1430 aa8.68□□□□□ -1.02
VPS53-212ENST00000572259 CNTLNQ9NXG0 1405 aa8.68□□□□□ -1.02
VPS53-212ENST00000572259 INO80Q9ULG1 1556 aaPredicted RBP8.68□□□□□ -1.02
VPS53-212ENST00000572259 PTPN23Q9H3S7 1636 aa8.68□□□□□ -1.02
VPS53-212ENST00000572259 KIF3BO15066 747 aa8.67□□□□□ -1.02
VPS53-212ENST00000572259 FKBP4Q02790 459 aaKnown RBP eCLIP8.67□□□□□ -1.02
VPS53-212ENST00000572259 ZNF211Q13398 564 aaPredicted RBP8.67□□□□□ -1.02
VPS53-212ENST00000572259 POTEAQ6S8J7 498 aa8.67□□□□□ -1.02
VPS53-212ENST00000572259 KIFC2Q96AC6 838 aa8.67□□□□□ -1.02
VPS53-212ENST00000572259 EGFL7Q9UHF1 273 aa8.67□□□□□ -1.02
VPS53-212ENST00000572259 SOWAHDA6NJG2 315 aa8.66□□□□□ -1.02
VPS53-212ENST00000572259 TXLNAP40222 546 aa8.66□□□□□ -1.02
VPS53-212ENST00000572259 SF3B2Q13435 895 aaKnown RBP8.66□□□□□ -1.02
VPS53-212ENST00000572259 C1orf53Q5VUE5 145 aa8.66□□□□□ -1.02
VPS53-212ENST00000572259 BICDL1Q6ZP65 573 aa8.66□□□□□ -1.02
VPS53-212ENST00000572259 GLYCTKQ8IVS8 523 aa8.66□□□□□ -1.02
VPS53-212ENST00000572259 RHPN1Q8TCX5 695 aa8.66□□□□□ -1.02
VPS53-212ENST00000572259 NEUROD4Q9HD90 331 aa8.66□□□□□ -1.02
VPS53-212ENST00000572259 ZDHHC3Q9NYG2 299 aa8.66□□□□□ -1.02
VPS53-212ENST00000572259 BIN2Q9UBW5 565 aaPredicted RBP8.66□□□□□ -1.02
VPS53-212ENST00000572259 DNMT3LQ9UJW3 386 aa8.66□□□□□ -1.02
VPS53-212ENST00000572259 DNMT3AQ9Y6K1 912 aaPredicted RBP8.66□□□□□ -1.02
VPS53-212ENST00000572259 SIGLEC1Q9BZZ2 1709 aa8.66□□□□□ -1.02
VPS53-212ENST00000572259 LOC100996750A0A140TA64 210 aa8.65□□□□□ -1.02
VPS53-212ENST00000572259 A0A1B0GTH6 734 aa8.65□□□□□ -1.02
VPS53-212ENST00000572259 H3BRB1 525 aa8.65□□□□□ -1.02
VPS53-212ENST00000572259 PPM1GO15355 546 aaPredicted RBP8.65□□□□□ -1.02
VPS53-212ENST00000572259 RTN1Q16799 776 aa8.65□□□□□ -1.02
VPS53-212ENST00000572259 COX20Q5RI15 118 aa8.65□□□□□ -1.02
VPS53-212ENST00000572259 HELQQ8TDG4 1101 aa8.65□□□□□ -1.02
VPS53-212ENST00000572259 KRTAP4-6Q9BYQ5 205 aa8.65□□□□□ -1.02
VPS53-212ENST00000572259 SAP130Q9H0E3 1048 aa8.65□□□□□ -1.02
VPS53-212ENST00000572259 TUT1Q9H6E5 874 aaKnown RBP8.65□□□□□ -1.02
VPS53-212ENST00000572259 QTRT2Q9H974 415 aaKnown RBP8.65□□□□□ -1.02
VPS53-212ENST00000572259 MAST1Q9Y2H9 1570 aa8.65□□□□□ -1.03
VPS53-212ENST00000572259 TCOF1Q13428 1488 aaKnown RBP8.64□□□□□ -1.03
VPS53-212ENST00000572259 ANKRD30AQ9BXX3 1397 aa8.64□□□□□ -1.03
VPS53-212ENST00000572259 ICMTO60725 284 aa8.64□□□□□ -1.03
VPS53-212ENST00000572259 MTMR3Q13615 1198 aa8.64□□□□□ -1.03
VPS53-212ENST00000572259 ARSJQ5FYB0 599 aaPredicted RBP8.64□□□□□ -1.03
VPS53-212ENST00000572259 MYO19Q96H55 970 aa8.64□□□□□ -1.03
VPS53-212ENST00000572259 WASHC2CQ9Y4E1 1318 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 UNCXA6NJT0 531 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 SOBPA7XYQ1 873 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 MSX1P28360 303 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 CEBPAP49715 358 aaPredicted RBP8.63□□□□□ -1.03
VPS53-212ENST00000572259 DGKZQ13574 1117 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 HIF1AQ16665 826 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 C11orf91Q3C1V1 193 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 PGBD3Q8N328 593 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 GAS2L1Q99501 681 aaPredicted RBP8.63□□□□□ -1.03
VPS53-212ENST00000572259 RRP7BPQ9NSQ0 103 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 STIM2Q9P246 746 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 PLXNC1O60486 1568 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 SHANK2Q9UPX8 1470 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 ABCC5O15440 1437 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 DAPK1P53355 1430 aa8.63□□□□□ -1.03
VPS53-212ENST00000572259 ZMYM3Q14202 1370 aa8.62□□□□□ -1.03
VPS53-212ENST00000572259 DNMT1P26358 1616 aaKnown RBP8.62□□□□□ -1.03
VPS53-212ENST00000572259 RBM47A0AV96 593 aaKnown RBP8.62□□□□□ -1.03
VPS53-212ENST00000572259 AAMPQ13685 434 aa8.62□□□□□ -1.03
VPS53-212ENST00000572259 GMPR2Q9P2T1 348 aaKnown RBP8.62□□□□□ -1.03
VPS53-212ENST00000572259 LRFN2Q9ULH4 789 aa8.62□□□□□ -1.03
VPS53-212ENST00000572259 DYRK1BQ9Y463 629 aa8.62□□□□□ -1.03
VPS53-212ENST00000572259 GJA3Q9Y6H8 435 aa8.62□□□□□ -1.03
VPS53-212ENST00000572259 DUOX2Q9NRD8 1548 aa8.62□□□□□ -1.03
VPS53-212ENST00000572259 KIF15Q9NS87 1388 aa8.61□□□□□ -1.03
VPS53-212ENST00000572259 FAM13AO94988 1023 aa8.61□□□□□ -1.03
VPS53-212ENST00000572259 F11P03951 625 aa8.61□□□□□ -1.03
VPS53-212ENST00000572259 DHX37Q8IY37 1157 aaKnown RBP8.61□□□□□ -1.03
VPS53-212ENST00000572259 IFT43Q96FT9 208 aa8.61□□□□□ -1.03
VPS53-212ENST00000572259 TRIM47Q96LD4 638 aa8.61□□□□□ -1.03
VPS53-212ENST00000572259 GPAMQ9HCL2 828 aa8.61□□□□□ -1.03
VPS53-212ENST00000572259 KLK14Q9P0G3 267 aa8.61□□□□□ -1.03
VPS53-212ENST00000572259 ANKIB1Q9P2G1 1089 aa8.61□□□□□ -1.03
VPS53-212ENST00000572259 GPC6Q9Y625 555 aaPredicted RBP8.61□□□□□ -1.03
VPS53-212ENST00000572259 MROH2AA6NES4 1674 aa8.61□□□□□ -1.03
VPS53-212ENST00000572259 KANK1Q14678 1352 aa8.61□□□□□ -1.03
VPS53-212ENST00000572259 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms