RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ZBTB3Q9H5J0 574 aa16.08■□□□□ 0.16
CLK3-215ENST00000564353 COL15A1P39059 1388 aa16.07■□□□□ 0.16
CLK3-215ENST00000564353 HEG1Q9ULI3 1381 aa16.07■□□□□ 0.16
CLK3-215ENST00000564353 CHST3Q7LGC8 479 aa16.07■□□□□ 0.16
CLK3-215ENST00000564353 KDM3BQ7LBC6 1761 aa16.07■□□□□ 0.16
CLK3-215ENST00000564353 PHF14O94880 888 aa16.07■□□□□ 0.16
CLK3-215ENST00000564353 CABP4P57796 275 aa16.07■□□□□ 0.16
CLK3-215ENST00000564353 TOB2Q14106 344 aaPredicted RBP16.07■□□□□ 0.16
CLK3-215ENST00000564353 DNTTIP2Q5QJE6 756 aaKnown RBP16.07■□□□□ 0.16
CLK3-215ENST00000564353 TTC6Q86TZ1 520 aa16.07■□□□□ 0.16
CLK3-215ENST00000564353 FAM13BQ9NYF5 915 aa16.07■□□□□ 0.16
CLK3-215ENST00000564353 LIG1P18858 919 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 TNNI3KQ59H18 835 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 TTLL7Q6ZT98 887 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 KLHL34Q8N239 644 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 CCDC39Q9UFE4 941 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 FPGT-TNNI3KV9GXZ4 949 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 MEGF6O75095 1541 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 AP5Z1O43299 807 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 ATF3P18847 181 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 IFNL2Q8IZJ0 200 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 TMEM94Q12767 1356 aa16.06■□□□□ 0.16
CLK3-215ENST00000564353 CACNA1FO60840 1977 aa16.05■□□□□ 0.16
CLK3-215ENST00000564353 A1BGP04217 495 aa16.05■□□□□ 0.16
CLK3-215ENST00000564353 TSC1Q92574 1164 aa16.05■□□□□ 0.16
CLK3-215ENST00000564353 TAF5LO75529 589 aa16.05■□□□□ 0.16
CLK3-215ENST00000564353 SNRPA1P09661 255 aaKnown RBP16.05■□□□□ 0.16
CLK3-215ENST00000564353 C1orf167Q5SNV9 1468 aa16.05■□□□□ 0.16
CLK3-215ENST00000564353 FAM177BA6PVY3 158 aa16.04■□□□□ 0.16
CLK3-215ENST00000564353 GOLIM4O00461 696 aa16.04■□□□□ 0.16
CLK3-215ENST00000564353 RPS6KB1P23443 525 aa16.04■□□□□ 0.16
CLK3-215ENST00000564353 HSP90AB3PQ58FF7 597 aa16.04■□□□□ 0.16
CLK3-215ENST00000564353 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.04■□□□□ 0.16
CLK3-215ENST00000564353 SH2B1Q9NRF2 756 aaPredicted RBP16.04■□□□□ 0.16
CLK3-215ENST00000564353 ZSCAN31Q96LW9 406 aaPredicted RBP16.04■□□□□ 0.16
CLK3-215ENST00000564353 ATP6V1DQ9Y5K8 247 aa16.04■□□□□ 0.16
CLK3-215ENST00000564353 RFX5P48382 616 aaPredicted RBP16.03■□□□□ 0.16
CLK3-215ENST00000564353 RNF20Q5VTR2 975 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 Q6ZUG5 572 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 BRF1Q92994 677 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 FTOQ9C0B1 505 aaKnown RBP eCLIP16.03■□□□□ 0.16
CLK3-215ENST00000564353 SNRKQ9NRH2 765 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 HDAC5Q9UQL6 1122 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 UTYO14607 1347 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 A0A087WWV3 80 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 UQCRHLA0A096LP55 91 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 EPB41L2O43491 1005 aaKnown RBP16.03■□□□□ 0.16
CLK3-215ENST00000564353 UQCRHP07919 91 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 PSMA5P28066 241 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 CCT2P78371 535 aaKnown RBP16.03■□□□□ 0.16
CLK3-215ENST00000564353 FMNL2Q96PY5 1086 aa16.03■□□□□ 0.16
CLK3-215ENST00000564353 CYP21A2P08686 494 aa16.02■□□□□ 0.16
CLK3-215ENST00000564353 GUCY1B3Q02153 619 aa16.02■□□□□ 0.16
CLK3-215ENST00000564353 LRRC24Q50LG9 513 aa16.02■□□□□ 0.16
CLK3-215ENST00000564353 LRP10Q7Z4F1 713 aa16.02■□□□□ 0.16
CLK3-215ENST00000564353 RAB11FIP4Q86YS3 637 aa16.02■□□□□ 0.16
CLK3-215ENST00000564353 TMEM87AQ8NBN3 555 aa16.02■□□□□ 0.16
CLK3-215ENST00000564353 TM6SF1Q9BZW5 370 aa16.02■□□□□ 0.16
CLK3-215ENST00000564353 RGPD5Q99666 1765 aa16.02■□□□□ 0.15
CLK3-215ENST00000564353 NBPF26B4DH59 902 aa16.02■□□□□ 0.15
CLK3-215ENST00000564353 NBPF14Q5TI25 921 aa16.02■□□□□ 0.15
CLK3-215ENST00000564353 NBPF10Q6P3W6 841 aaKnown RBP16.02■□□□□ 0.15
CLK3-215ENST00000564353 NBPF15Q8N660 670 aa16.02■□□□□ 0.15
CLK3-215ENST00000564353 FBXW7Q969H0 707 aa16.02■□□□□ 0.15
CLK3-215ENST00000564353 LMO7Q8WWI1 1683 aa16.02■□□□□ 0.15
CLK3-215ENST00000564353 GOLGA6L4A6NEF3 574 aa16.01■□□□□ 0.15
CLK3-215ENST00000564353 ZNF500O60304 480 aaPredicted RBP16.01■□□□□ 0.15
CLK3-215ENST00000564353 LUZP1Q86V48 1076 aa16.01■□□□□ 0.15
CLK3-215ENST00000564353 DACT1Q9NYF0 836 aa16.01■□□□□ 0.15
CLK3-215ENST00000564353 HIP1O00291 1037 aa16.01■□□□□ 0.15
CLK3-215ENST00000564353 PUS3Q9BZE2 481 aaKnown RBP16.01■□□□□ 0.15
CLK3-215ENST00000564353 NCOA5Q9HCD5 579 aaKnown RBP16.01■□□□□ 0.15
CLK3-215ENST00000564353 NCAPD2Q15021 1401 aa16.01■□□□□ 0.15
CLK3-215ENST00000564353 KRT85P78386 507 aa16■□□□□ 0.15
CLK3-215ENST00000564353 HS1BP3Q53T59 392 aa16■□□□□ 0.15
CLK3-215ENST00000564353 NEK1Q96PY6 1258 aa16■□□□□ 0.15
CLK3-215ENST00000564353 ZNF609O15014 1411 aa16■□□□□ 0.15
CLK3-215ENST00000564353 STOX1Q6ZVD7 989 aa16■□□□□ 0.15
CLK3-215ENST00000564353 KCNB2Q92953 911 aa16■□□□□ 0.15
CLK3-215ENST00000564353 SPATA32Q96LK8 384 aa16■□□□□ 0.15
CLK3-215ENST00000564353 STRN4Q9NRL3 753 aa16■□□□□ 0.15
CLK3-215ENST00000564353 MED23Q9ULK4 1368 aa16■□□□□ 0.15
CLK3-215ENST00000564353 KDM4AO75164 1064 aa16■□□□□ 0.15
CLK3-215ENST00000564353 DCAF5Q96JK2 942 aa16■□□□□ 0.15
CLK3-215ENST00000564353 COPRSQ9NQ92 184 aa16■□□□□ 0.15
CLK3-215ENST00000564353 FKBP4Q02790 459 aaKnown RBP eCLIP15.99■□□□□ 0.15
CLK3-215ENST00000564353 APOBRQ0VD83 1088 aa15.99■□□□□ 0.15
CLK3-215ENST00000564353 TTLL5Q6EMB2 1281 aa15.99■□□□□ 0.15
CLK3-215ENST00000564353 TOM1L2Q6ZVM7 507 aa15.99■□□□□ 0.15
CLK3-215ENST00000564353 BICD2Q8TD16 824 aa15.99■□□□□ 0.15
CLK3-215ENST00000564353 ERCC4Q92889 916 aaPredicted RBP15.99■□□□□ 0.15
CLK3-215ENST00000564353 ATP5JP18859 108 aa15.99■□□□□ 0.15
CLK3-215ENST00000564353 HAND2P61296 217 aa15.99■□□□□ 0.15
CLK3-215ENST00000564353 KIAA2012Q0VF49 1180 aa15.99■□□□□ 0.15
CLK3-215ENST00000564353 PAXIP1Q6ZW49 1069 aaPredicted RBP15.99■□□□□ 0.15
CLK3-215ENST00000564353 GPHNQ9NQX3 736 aaPredicted RBP15.99■□□□□ 0.15
CLK3-215ENST00000564353 N4BP2Q86UW6 1770 aaPredicted RBP15.98■□□□□ 0.15
CLK3-215ENST00000564353 USP54Q70EL1 1684 aa15.98■□□□□ 0.15
CLK3-215ENST00000564353 H3BQV1 296 aa15.98■□□□□ 0.15
CLK3-215ENST00000564353 IFFO2Q5TF58 517 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms