RNA–Protein interactions for RNA: ENST00000563623.5

ABCA3-203, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 1 (best)

Gene ABCA3, Length 3,649 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-203ENST00000563623 SLC39A6Q13433 755 aa13.93□□□□□ -0.18
ABCA3-203ENST00000563623 ZNF589Q86UQ0 364 aaPredicted RBP13.93□□□□□ -0.18
ABCA3-203ENST00000563623 ZNF75DP51815 510 aa13.92□□□□□ -0.18
ABCA3-203ENST00000563623 ESCO1Q5FWF5 840 aa13.92□□□□□ -0.18
ABCA3-203ENST00000563623 Q6ZUG5 572 aa13.92□□□□□ -0.18
ABCA3-203ENST00000563623 MAP4K1Q92918 833 aa13.92□□□□□ -0.18
ABCA3-203ENST00000563623 SASH1O94885 1247 aa13.92□□□□□ -0.18
ABCA3-203ENST00000563623 SF3A1Q15459 793 aaKnown RBP13.92□□□□□ -0.18
ABCA3-203ENST00000563623 NEK1Q96PY6 1258 aa13.92□□□□□ -0.18
ABCA3-203ENST00000563623 MYD88Q99836 296 aa13.92□□□□□ -0.18
ABCA3-203ENST00000563623 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.92□□□□□ -0.18
ABCA3-203ENST00000563623 RIMBP3CA6NJZ7 1639 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 RIMBP3BA6NNM3 1639 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 RIMBP3Q9UFD9 1639 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 ME1P48163 572 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 DDX46Q7L014 1031 aaKnown RBP13.91□□□□□ -0.18
ABCA3-203ENST00000563623 DHX37Q8IY37 1157 aaKnown RBP13.91□□□□□ -0.18
ABCA3-203ENST00000563623 SDF4Q9BRK5 362 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 KINO60870 393 aaKnown RBP13.91□□□□□ -0.18
ABCA3-203ENST00000563623 ALDH1L1O75891 902 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 KCNA6P17658 529 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 SEC62Q99442 399 aaKnown RBP13.91□□□□□ -0.18
ABCA3-203ENST00000563623 CLSTN2Q9H4D0 955 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 CGNQ9P2M7 1197 aaKnown RBP13.91□□□□□ -0.18
ABCA3-203ENST00000563623 CHGBP05060 677 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 ZSCAN25Q6NSZ9 544 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 C3P01024 1663 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 PEAK1Q9H792 1746 aa13.91□□□□□ -0.18
ABCA3-203ENST00000563623 TRHP20396 242 aaPredicted RBP13.9□□□□□ -0.18
ABCA3-203ENST00000563623 CCAR1Q8IX12 1150 aaKnown RBP13.9□□□□□ -0.18
ABCA3-203ENST00000563623 FTOQ9C0B1 505 aaKnown RBP eCLIP13.9□□□□□ -0.18
ABCA3-203ENST00000563623 BABAM1Q9NWV8 329 aa13.9□□□□□ -0.18
ABCA3-203ENST00000563623 PHF8Q9UPP1 1060 aa13.9□□□□□ -0.18
ABCA3-203ENST00000563623 MON2Q7Z3U7 1717 aa13.9□□□□□ -0.18
ABCA3-203ENST00000563623 ARID5BQ14865 1188 aa13.9□□□□□ -0.18
ABCA3-203ENST00000563623 ADCY9O60503 1353 aa13.9□□□□□ -0.18
ABCA3-203ENST00000563623 LINS1Q8NG48 757 aa13.9□□□□□ -0.18
ABCA3-203ENST00000563623 CACTINQ8WUQ7 758 aaKnown RBP13.9□□□□□ -0.18
ABCA3-203ENST00000563623 CFAP45Q9UL16 551 aa13.9□□□□□ -0.18
ABCA3-203ENST00000563623 CHST3Q7LGC8 479 aa13.89□□□□□ -0.19
ABCA3-203ENST00000563623 USP16Q9Y5T5 823 aa13.89□□□□□ -0.19
ABCA3-203ENST00000563623 TOB2Q14106 344 aaPredicted RBP13.89□□□□□ -0.19
ABCA3-203ENST00000563623 PGBD1Q96JS3 809 aa13.89□□□□□ -0.19
ABCA3-203ENST00000563623 ATP5J2-PTCD1G3V325 749 aa13.89□□□□□ -0.19
ABCA3-203ENST00000563623 PTCD1O75127 700 aaKnown RBP13.89□□□□□ -0.19
ABCA3-203ENST00000563623 CEP135Q66GS9 1140 aa13.89□□□□□ -0.19
ABCA3-203ENST00000563623 IL17RAQ96F46 866 aa13.89□□□□□ -0.19
ABCA3-203ENST00000563623 NRKQ7Z2Y5 1582 aa13.88□□□□□ -0.19
ABCA3-203ENST00000563623 RNMTO43148 476 aaKnown RBP13.88□□□□□ -0.19
ABCA3-203ENST00000563623 AKAP4Q5JQC9 854 aa13.88□□□□□ -0.19
ABCA3-203ENST00000563623 IP6K1Q92551 441 aa13.88□□□□□ -0.19
ABCA3-203ENST00000563623 GTF2F1P35269 517 aaKnown RBP eCLIP13.88□□□□□ -0.19
ABCA3-203ENST00000563623 DMTNQ08495 405 aa13.88□□□□□ -0.19
ABCA3-203ENST00000563623 KRT32Q14532 448 aa13.88□□□□□ -0.19
ABCA3-203ENST00000563623 PTPN14Q15678 1187 aa13.88□□□□□ -0.19
ABCA3-203ENST00000563623 GIGYF1O75420 1035 aaPredicted RBP13.88□□□□□ -0.19
ABCA3-203ENST00000563623 SKILP12757 684 aa13.88□□□□□ -0.19
ABCA3-203ENST00000563623 RAB11FIP4Q86YS3 637 aa13.88□□□□□ -0.19
ABCA3-203ENST00000563623 XAGE3Q8WTP9 111 aa13.88□□□□□ -0.19
ABCA3-203ENST00000563623 SYTL4Q96C24 671 aaPredicted RBP13.88□□□□□ -0.19
ABCA3-203ENST00000563623 NCOA5Q9HCD5 579 aaKnown RBP13.88□□□□□ -0.19
ABCA3-203ENST00000563623 TECPR2O15040 1411 aa13.88□□□□□ -0.19
ABCA3-203ENST00000563623 SMC2O95347 1197 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 APOBRQ0VD83 1088 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 ADAMTS13Q76LX8 1427 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 COPS6Q7L5N1 327 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 UBE3BQ7Z3V4 1068 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 FSIP1Q8NA03 581 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 SMTNL1A8MU46 457 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 BIN1O00499 593 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 ZSCAN20P17040 1043 aaPredicted RBP13.87□□□□□ -0.19
ABCA3-203ENST00000563623 TFCP2Q12800 502 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 CCDC144BQ3MJ40 725 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 CCDC144CPQ8IYA2 1237 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 SLFNL1Q499Z3 407 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 C11orf57Q6ZUT1 292 aaPredicted RBP13.87□□□□□ -0.19
ABCA3-203ENST00000563623 HMG20BQ9P0W2 317 aa13.87□□□□□ -0.19
ABCA3-203ENST00000563623 TAF5LO75529 589 aa13.86□□□□□ -0.19
ABCA3-203ENST00000563623 HOXB7P09629 217 aa13.86□□□□□ -0.19
ABCA3-203ENST00000563623 GORABQ5T7V8 394 aa13.86□□□□□ -0.19
ABCA3-203ENST00000563623 ELP1O95163 1332 aa13.86□□□□□ -0.19
ABCA3-203ENST00000563623 ISM2Q6H9L7 571 aa13.86□□□□□ -0.19
ABCA3-203ENST00000563623 AOPEPQ8N6M6 819 aa13.86□□□□□ -0.19
ABCA3-203ENST00000563623 NLRP2Q9NX02 1062 aa13.86□□□□□ -0.19
ABCA3-203ENST00000563623 SPATA31D1Q6ZQQ2 1576 aa13.86□□□□□ -0.19
ABCA3-203ENST00000563623 DBNDD2Q9BQY9 259 aa13.85□□□□□ -0.19
ABCA3-203ENST00000563623 ZNF330Q9Y3S2 320 aaPredicted RBP13.85□□□□□ -0.19
ABCA3-203ENST00000563623 GOLIM4O00461 696 aa13.85□□□□□ -0.19
ABCA3-203ENST00000563623 CSB-PGBD3P0DP91 1061 aa13.85□□□□□ -0.19
ABCA3-203ENST00000563623 NCBP1Q09161 790 aaKnown RBP13.85□□□□□ -0.19
ABCA3-203ENST00000563623 STX1AQ16623 288 aa13.85□□□□□ -0.19
ABCA3-203ENST00000563623 GTF3C6Q969F1 213 aa13.85□□□□□ -0.19
ABCA3-203ENST00000563623 CCDC69A6NI79 296 aa13.85□□□□□ -0.19
ABCA3-203ENST00000563623 ZC3H6P61129 1189 aaKnown RBP13.85□□□□□ -0.19
ABCA3-203ENST00000563623 MTX1Q13505 466 aa13.85□□□□□ -0.19
ABCA3-203ENST00000563623 PTPRUQ92729 1446 aa13.85□□□□□ -0.19
ABCA3-203ENST00000563623 USP42Q9H9J4 1324 aaKnown RBP13.85□□□□□ -0.19
ABCA3-203ENST00000563623 EPHA10Q5JZY3 1008 aa13.84□□□□□ -0.19
ABCA3-203ENST00000563623 OTUD7BQ6GQQ9 843 aa13.84□□□□□ -0.19
ABCA3-203ENST00000563623 CEP57L1Q8IYX8 460 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms