RNA–Protein interactions for RNA: ENST00000560679.1

TPM1-225, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-225ENST00000560679 HUNKP57058 714 aa13.21□□□□□ -0.29
TPM1-225ENST00000560679 U2AF1Q01081 240 aaKnown RBP eCLIP13.21□□□□□ -0.29
TPM1-225ENST00000560679 KIAA2012Q0VF49 1180 aa13.21□□□□□ -0.29
TPM1-225ENST00000560679 GIGYF2Q6Y7W6 1299 aaKnown RBP13.21□□□□□ -0.29
TPM1-225ENST00000560679 LRP10Q7Z4F1 713 aa13.21□□□□□ -0.29
TPM1-225ENST00000560679 EIF4A1P60842 406 aaKnown RBP13.2□□□□□ -0.3
TPM1-225ENST00000560679 CDC37L1Q7L3B6 337 aa13.2□□□□□ -0.3
TPM1-225ENST00000560679 USP48Q86UV5 1035 aa13.2□□□□□ -0.3
TPM1-225ENST00000560679 CFAP53Q96M91 514 aa13.2□□□□□ -0.3
TPM1-225ENST00000560679 SAGE1Q9NXZ1 904 aa13.2□□□□□ -0.3
TPM1-225ENST00000560679 COL4A1P02462 1669 aa13.2□□□□□ -0.3
TPM1-225ENST00000560679 EGFRP00533 1210 aa13.19□□□□□ -0.3
TPM1-225ENST00000560679 DPP8Q6V1X1 898 aaPredicted RBP13.19□□□□□ -0.3
TPM1-225ENST00000560679 MICALL2Q8IY33 904 aa13.19□□□□□ -0.3
TPM1-225ENST00000560679 SUPT20HQ8NEM7 779 aa13.19□□□□□ -0.3
TPM1-225ENST00000560679 NLRP3Q96P20 1036 aa13.19□□□□□ -0.3
TPM1-225ENST00000560679 BCL2L13Q9BXK5 485 aa13.19□□□□□ -0.3
TPM1-225ENST00000560679 PARP10Q53GL7 1025 aa13.18□□□□□ -0.3
TPM1-225ENST00000560679 SLC10A5Q5PT55 438 aa13.18□□□□□ -0.3
TPM1-225ENST00000560679 RGMBQ6NW40 437 aa13.18□□□□□ -0.3
TPM1-225ENST00000560679 PPP1R42Q7Z4L9 355 aa13.18□□□□□ -0.3
TPM1-225ENST00000560679 CNOT7Q9UIV1 285 aaKnown RBP13.18□□□□□ -0.3
TPM1-225ENST00000560679 DDX60Q8IY21 1712 aaKnown RBP13.18□□□□□ -0.3
TPM1-225ENST00000560679 AKAP11Q9UKA4 1901 aa13.17□□□□□ -0.3
TPM1-225ENST00000560679 ADM5C9JUS6 153 aa13.17□□□□□ -0.3
TPM1-225ENST00000560679 TNIP1Q15025 636 aa13.17□□□□□ -0.3
TPM1-225ENST00000560679 PRPF38BQ5VTL8 546 aaKnown RBP13.17□□□□□ -0.3
TPM1-225ENST00000560679 SP8Q8IXZ3 490 aa13.17□□□□□ -0.3
TPM1-225ENST00000560679 MPNDQ8N594 471 aa13.17□□□□□ -0.3
TPM1-225ENST00000560679 THUMPD2Q9BTF0 503 aaKnown RBP13.17□□□□□ -0.3
TPM1-225ENST00000560679 NUDCQ9Y266 331 aa13.17□□□□□ -0.3
TPM1-225ENST00000560679 ZBTB12Q9Y330 459 aaPredicted RBP13.17□□□□□ -0.3
TPM1-225ENST00000560679 POLR2AP24928 1970 aaKnown RBP13.17□□□□□ -0.3
TPM1-225ENST00000560679 ERBB4Q15303 1308 aa13.16□□□□□ -0.3
TPM1-225ENST00000560679 HCLS1P14317 486 aaPredicted RBP13.16□□□□□ -0.3
TPM1-225ENST00000560679 PPP2R1AP30153 589 aa13.16□□□□□ -0.3
TPM1-225ENST00000560679 KIF23Q02241 960 aaPredicted RBP13.16□□□□□ -0.3
TPM1-225ENST00000560679 PDIA6Q15084 440 aa13.16□□□□□ -0.3
TPM1-225ENST00000560679 PROSER3Q2NL68 480 aa13.16□□□□□ -0.3
TPM1-225ENST00000560679 SAMD7Q7Z3H4 446 aa13.16□□□□□ -0.3
TPM1-225ENST00000560679 UTP14AQ9BVJ6 771 aaKnown RBP13.16□□□□□ -0.3
TPM1-225ENST00000560679 TMX4Q9H1E5 349 aaPredicted RBP13.16□□□□□ -0.3
TPM1-225ENST00000560679 GBA2Q9HCG7 927 aaPredicted RBP13.16□□□□□ -0.3
TPM1-225ENST00000560679 RNF186Q9NXI6 227 aa13.16□□□□□ -0.3
TPM1-225ENST00000560679 SCN9AQ15858 1988 aa13.15□□□□□ -0.3
TPM1-225ENST00000560679 PSMD14O00487 310 aa13.15□□□□□ -0.3
TPM1-225ENST00000560679 TRPA1O75762 1119 aa13.15□□□□□ -0.3
TPM1-225ENST00000560679 BBOX1O75936 387 aa13.15□□□□□ -0.3
TPM1-225ENST00000560679 SLC10A3P09131 477 aa13.15□□□□□ -0.3
TPM1-225ENST00000560679 GRAPQ13588 217 aa13.15□□□□□ -0.3
TPM1-225ENST00000560679 TBC1D10BQ4KMP7 808 aaPredicted RBP13.15□□□□□ -0.3
TPM1-225ENST00000560679 KRT26Q7Z3Y9 468 aa13.15□□□□□ -0.3
TPM1-225ENST00000560679 GRAPLQ8TC17 118 aaPredicted RBP13.15□□□□□ -0.3
TPM1-225ENST00000560679 RTL9Q8NET4 1388 aa13.15□□□□□ -0.3
TPM1-225ENST00000560679 HTTP42858 3142 aa13.15□□□□□ -0.31
TPM1-225ENST00000560679 H7C1D1 291 aa13.14□□□□□ -0.31
TPM1-225ENST00000560679 ANXA1P04083 346 aa13.14□□□□□ -0.31
TPM1-225ENST00000560679 PNISRQ8TF01 805 aaKnown RBP13.14□□□□□ -0.31
TPM1-225ENST00000560679 DPF2Q92785 391 aa13.14□□□□□ -0.31
TPM1-225ENST00000560679 MKI67P46013 3256 aaKnown RBP13.14□□□□□ -0.31
TPM1-225ENST00000560679 ZNF157P51786 506 aaPredicted RBP13.13□□□□□ -0.31
TPM1-225ENST00000560679 CTU1Q7Z7A3 348 aaKnown RBP13.13□□□□□ -0.31
TPM1-225ENST00000560679 NLRP10Q86W26 655 aa13.13□□□□□ -0.31
TPM1-225ENST00000560679 CCDC102AQ96A19 550 aa13.13□□□□□ -0.31
TPM1-225ENST00000560679 CSRNP1Q96S65 589 aa13.13□□□□□ -0.31
TPM1-225ENST00000560679 DBNDD1Q9H9R9 158 aa13.13□□□□□ -0.31
TPM1-225ENST00000560679 ASTN2O75129 1339 aaPredicted RBP13.13□□□□□ -0.31
TPM1-225ENST00000560679 DDX46Q7L014 1031 aaKnown RBP13.12□□□□□ -0.31
TPM1-225ENST00000560679 RASAL3Q86YV0 1011 aa13.12□□□□□ -0.31
TPM1-225ENST00000560679 C2orf69Q8N8R5 385 aa13.12□□□□□ -0.31
TPM1-225ENST00000560679 CCER1Q8TC90 406 aaPredicted RBP13.12□□□□□ -0.31
TPM1-225ENST00000560679 PLEKHF1Q96S99 279 aa13.12□□□□□ -0.31
TPM1-225ENST00000560679 KCNQ5Q9NR82 932 aa13.12□□□□□ -0.31
TPM1-225ENST00000560679 HPS5Q9UPZ3 1129 aa13.12□□□□□ -0.31
TPM1-225ENST00000560679 PAPPA2Q9BXP8 1791 aa13.12□□□□□ -0.31
TPM1-225ENST00000560679 GGA3Q9NZ52 723 aa13.11□□□□□ -0.31
TPM1-225ENST00000560679 RPS12P25398 132 aaKnown RBP13.1□□□□□ -0.31
TPM1-225ENST00000560679 NFE2L2Q16236 605 aa13.1□□□□□ -0.31
TPM1-225ENST00000560679 KIF4BQ2VIQ3 1234 aa13.1□□□□□ -0.31
TPM1-225ENST00000560679 CDCA5Q96FF9 252 aa13.1□□□□□ -0.31
TPM1-225ENST00000560679 POLLQ9UGP5 575 aa13.1□□□□□ -0.31
TPM1-225ENST00000560679 PSME4Q14997 1843 aa13.1□□□□□ -0.31
TPM1-225ENST00000560679 SH3TC1Q8TE82 1336 aa13.1□□□□□ -0.31
TPM1-225ENST00000560679 ZNF609O15014 1411 aa13.09□□□□□ -0.31
TPM1-225ENST00000560679 ECE2O60344 883 aa13.09□□□□□ -0.31
TPM1-225ENST00000560679 WASHC4Q2M389 1173 aa13.09□□□□□ -0.31
TPM1-225ENST00000560679 RBM26Q5T8P6 1007 aaKnown RBP13.09□□□□□ -0.31
TPM1-225ENST00000560679 TMC4Q7Z404 712 aa13.09□□□□□ -0.31
TPM1-225ENST00000560679 CELF1Q92879 486 aaKnown RBP13.09□□□□□ -0.31
TPM1-225ENST00000560679 ZNF428Q96B54 188 aa13.09□□□□□ -0.31
TPM1-225ENST00000560679 DCPSQ96C86 337 aaKnown RBP13.09□□□□□ -0.31
TPM1-225ENST00000560679 TRMT112Q9UI30 125 aaKnown RBP13.09□□□□□ -0.31
TPM1-225ENST00000560679 BRCA2P51587 3418 aa13.09□□□□□ -0.31
TPM1-225ENST00000560679 RIMBP2O15034 1052 aa13.08□□□□□ -0.32
TPM1-225ENST00000560679 EIF2S2P20042 333 aaKnown RBP13.08□□□□□ -0.32
TPM1-225ENST00000560679 GPSM2P81274 684 aa13.08□□□□□ -0.32
TPM1-225ENST00000560679 DOK7Q18PE1 504 aa13.08□□□□□ -0.32
TPM1-225ENST00000560679 COPS6Q7L5N1 327 aa13.08□□□□□ -0.32
TPM1-225ENST00000560679 XAGE3Q8WTP9 111 aa13.08□□□□□ -0.32
TPM1-225ENST00000560679 TSPYL4Q9UJ04 414 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms