RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 NFKB1P19838 968 aa3.02□□□□□ -1.93
USP3-209ENST00000558925 COL19A1Q14993 1142 aa3.02□□□□□ -1.93
USP3-209ENST00000558925 HDGFL1Q5TGJ6 251 aa3.02□□□□□ -1.93
USP3-209ENST00000558925 POTEAQ6S8J7 498 aa3.02□□□□□ -1.93
USP3-209ENST00000558925 TMEM130Q8N3G9 435 aa3.02□□□□□ -1.93
USP3-209ENST00000558925 POU5F2Q8N7G0 328 aa3.02□□□□□ -1.93
USP3-209ENST00000558925 UCN2Q96RP3 112 aa3.02□□□□□ -1.93
USP3-209ENST00000558925 NEUROD4Q9HD90 331 aa3.02□□□□□ -1.93
USP3-209ENST00000558925 HCN4Q9Y3Q4 1203 aa3.02□□□□□ -1.93
USP3-209ENST00000558925 SERTM1A2A2V5 107 aa3.01□□□□□ -1.93
USP3-209ENST00000558925 WNT11O96014 354 aa3.01□□□□□ -1.93
USP3-209ENST00000558925 HOXA10P31260 410 aaPredicted RBP3.01□□□□□ -1.93
USP3-209ENST00000558925 MLLT1Q03111 559 aaPredicted RBP3.01□□□□□ -1.93
USP3-209ENST00000558925 NFIAQ12857 509 aa3.01□□□□□ -1.93
USP3-209ENST00000558925 CFAP70Q5T0N1 1121 aa3.01□□□□□ -1.93
USP3-209ENST00000558925 CBLL1Q75N03 491 aa3.01□□□□□ -1.93
USP3-209ENST00000558925 BTLAQ7Z6A9 289 aa3.01□□□□□ -1.93
USP3-209ENST00000558925 WFDC8Q8IUA0 241 aa3.01□□□□□ -1.93
USP3-209ENST00000558925 WWC1Q8IX03 1113 aa3.01□□□□□ -1.93
USP3-209ENST00000558925 PHACTR1Q9C0D0 580 aa3.01□□□□□ -1.93
USP3-209ENST00000558925 ZFATQ9P243 1243 aa3.01□□□□□ -1.93
USP3-209ENST00000558925 HMX2A2RU54 273 aa3□□□□□ -1.93
USP3-209ENST00000558925 PTCD1O75127 700 aaKnown RBP3□□□□□ -1.93
USP3-209ENST00000558925 WISP1O95388 367 aa3□□□□□ -1.93
USP3-209ENST00000558925 GLB1P16278 677 aa3□□□□□ -1.93
USP3-209ENST00000558925 EIF4G2P78344 907 aaKnown RBP eCLIP3□□□□□ -1.93
USP3-209ENST00000558925 MAP7D1Q3KQU3 841 aa3□□□□□ -1.93
USP3-209ENST00000558925 CDCA8Q53HL2 280 aa3□□□□□ -1.93
USP3-209ENST00000558925 FBLN7Q53RD9 439 aa3□□□□□ -1.93
USP3-209ENST00000558925 C1orf53Q5VUE5 145 aa3□□□□□ -1.93
USP3-209ENST00000558925 TRIM42Q8IWZ5 723 aa3□□□□□ -1.93
USP3-209ENST00000558925 COL26A1Q96A83 441 aa3□□□□□ -1.93
USP3-209ENST00000558925 MRPL18Q9H0U6 180 aaKnown RBP3□□□□□ -1.93
USP3-209ENST00000558925 TSPAN10Q9H1Z9 355 aaPredicted RBP3□□□□□ -1.93
USP3-209ENST00000558925 ALG2Q9H553 416 aa3□□□□□ -1.93
USP3-209ENST00000558925 C7orf69Q9H7B7 122 aa3□□□□□ -1.93
USP3-209ENST00000558925 PRM3Q9NNZ6 103 aa3□□□□□ -1.93
USP3-209ENST00000558925 FRRS1LQ9P0K9 344 aa3□□□□□ -1.93
USP3-209ENST00000558925 STOML1Q9UBI4 398 aa3□□□□□ -1.93
USP3-209ENST00000558925 GTF3C5Q9Y5Q8 519 aaPredicted RBP3□□□□□ -1.93
USP3-209ENST00000558925 PALM3A6NDB9 673 aaPredicted RBP2.99□□□□□ -1.93
USP3-209ENST00000558925 BACH1O14867 736 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 TM4SF5O14894 197 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 GSC2O15499 205 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 HIRAP54198 1017 aaPredicted RBP2.99□□□□□ -1.93
USP3-209ENST00000558925 SETDB1Q15047 1291 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 WASHC4Q2M389 1173 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 INTS5Q6P9B9 1019 aaKnown RBP2.99□□□□□ -1.93
USP3-209ENST00000558925 HFE2Q6ZVN8 426 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 ZC3HAV1Q7Z2W4 902 aaKnown RBP2.99□□□□□ -1.93
USP3-209ENST00000558925 AEBP1Q8IUX7 1158 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 TRPM4Q8TD43 1214 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 TRAIPQ9BWF2 469 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 KRTAP9-8Q9BYQ0 159 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 KRTAP9-3Q9BYQ3 159 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 PPP1R12CQ9BZL4 782 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 BCS1LQ9Y276 419 aa2.99□□□□□ -1.93
USP3-209ENST00000558925 C21orf2O43822 256 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 ITGB5P18084 799 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 LMOD1P29536 600 aaPredicted RBP2.98□□□□□ -1.93
USP3-209ENST00000558925 GTF2IP78347 998 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 SRPK2P78362 688 aaKnown RBP2.98□□□□□ -1.93
USP3-209ENST00000558925 CCINQ13939 588 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 ZNF124Q15973 351 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 RNF43Q68DV7 783 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 ELMSAN1Q6PJG2 1045 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 DHX32Q7L7V1 743 aaKnown RBP2.98□□□□□ -1.93
USP3-209ENST00000558925 GALNT11Q8NCW6 608 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 SHKBP1Q8TBC3 707 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 TTC9Q92623 222 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 PBXIP1Q96AQ6 731 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 SMG9Q9H0W8 520 aaKnown RBP2.98□□□□□ -1.93
USP3-209ENST00000558925 ANKIB1Q9P2G1 1089 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 TFIP11Q9UBB9 837 aaKnown RBP2.98□□□□□ -1.93
USP3-209ENST00000558925 DMGDHQ9UI17 866 aaKnown RBP2.98□□□□□ -1.93
USP3-209ENST00000558925 KIAA1024Q9UPX6 916 aa2.98□□□□□ -1.93
USP3-209ENST00000558925 TARSP26639 723 aaKnown RBP2.97□□□□□ -1.93
USP3-209ENST00000558925 GRIK1P39086 918 aa2.97□□□□□ -1.93
USP3-209ENST00000558925 ZNF648Q5T619 568 aaPredicted RBP2.97□□□□□ -1.93
USP3-209ENST00000558925 KRT25Q7Z3Z0 450 aa2.97□□□□□ -1.93
USP3-209ENST00000558925 IFT43Q96FT9 208 aa2.97□□□□□ -1.93
USP3-209ENST00000558925 PNMA5Q96PV4 448 aa2.97□□□□□ -1.93
USP3-209ENST00000558925 DBNDD2Q9BQY9 259 aa2.97□□□□□ -1.93
USP3-209ENST00000558925 EFCC1Q9HA90 598 aa2.97□□□□□ -1.93
USP3-209ENST00000558925 KCNK4Q9NYG8 393 aa2.97□□□□□ -1.93
USP3-209ENST00000558925 MAFBQ9Y5Q3 323 aaPredicted RBP2.97□□□□□ -1.93
USP3-209ENST00000558925 ZBTB7CA1YPR0 619 aa2.96□□□□□ -1.94
USP3-209ENST00000558925 DHX15O43143 795 aaKnown RBP2.96□□□□□ -1.94
USP3-209ENST00000558925 PPP1R15AO75807 674 aaPredicted RBP2.96□□□□□ -1.94
USP3-209ENST00000558925 MAP3K6O95382 1288 aa2.96□□□□□ -1.94
USP3-209ENST00000558925 PSMA6P60900 246 aaKnown RBP2.96□□□□□ -1.94
USP3-209ENST00000558925 GPLD1P80108 840 aa2.96□□□□□ -1.94
USP3-209ENST00000558925 SEMA3FQ13275 785 aa2.96□□□□□ -1.94
USP3-209ENST00000558925 ALDH16A1Q8IZ83 802 aa2.96□□□□□ -1.94
USP3-209ENST00000558925 SHISA5Q8N114 240 aa2.96□□□□□ -1.94
USP3-209ENST00000558925 FAM46AQ96IP4 442 aaKnown RBP2.96□□□□□ -1.94
USP3-209ENST00000558925 J3QW42 95 aa2.95□□□□□ -1.94
USP3-209ENST00000558925 ZBTB7BO15156 539 aaPredicted RBP2.95□□□□□ -1.94
USP3-209ENST00000558925 ZNF865P0CJ78 1059 aaPredicted RBP2.95□□□□□ -1.94
USP3-209ENST00000558925 SOX11P35716 441 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms