RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PTPN21Q16825 1174 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 NBPF6Q5VWK0 638 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 RAB11FIP4Q86YS3 637 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 FAM200AQ8TCP9 573 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 CACTINQ8WUQ7 758 aaKnown RBP14.64□□□□□ -0.07
LDLR-205ENST00000557933 NBPF4Q96M43 638 aa14.64□□□□□ -0.07
LDLR-205ENST00000557933 TNNT1P13805 278 aa14.63□□□□□ -0.07
LDLR-205ENST00000557933 MAPK8IP2Q13387 824 aaPredicted RBP14.63□□□□□ -0.07
LDLR-205ENST00000557933 SLC27A2O14975 620 aa14.63□□□□□ -0.07
LDLR-205ENST00000557933 ZNF165P49910 485 aa14.63□□□□□ -0.07
LDLR-205ENST00000557933 TEFQ10587 303 aa14.63□□□□□ -0.07
LDLR-205ENST00000557933 TPD52L1Q16890 204 aaPredicted RBP14.63□□□□□ -0.07
LDLR-205ENST00000557933 DNAJC2Q99543 621 aaKnown RBP14.63□□□□□ -0.07
LDLR-205ENST00000557933 A0A0G2JLW4 131 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 BTBD11A6QL63 1104 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 FGD1P98174 961 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 MTERF4Q7Z6M4 381 aaKnown RBP14.62□□□□□ -0.07
LDLR-205ENST00000557933 PGBD1Q96JS3 809 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 ZSWIM6Q9HCJ5 1215 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 LTN1O94822 1766 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 DMTNQ08495 405 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 NCBP1Q09161 790 aaKnown RBP14.62□□□□□ -0.07
LDLR-205ENST00000557933 SLC39A6Q13433 755 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 VPS53Q5VIR6 699 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 BLOC1S2Q6QNY1 142 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 BICC1Q9H694 974 aaKnown RBP14.62□□□□□ -0.07
LDLR-205ENST00000557933 CAMTA1Q9Y6Y1 1673 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 MAP3K5Q99683 1374 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 SASH1O94885 1247 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 EIF4A1P60842 406 aaKnown RBP14.62□□□□□ -0.07
LDLR-205ENST00000557933 CCT2P78371 535 aaKnown RBP14.62□□□□□ -0.07
LDLR-205ENST00000557933 NECTIN1Q15223 517 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 SUCLG2Q96I99 432 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 FMNL2Q96PY5 1086 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 CLIP2Q9UDT6 1046 aa14.62□□□□□ -0.07
LDLR-205ENST00000557933 C11orf57Q6ZUT1 292 aaPredicted RBP14.61□□□□□ -0.07
LDLR-205ENST00000557933 LEO1Q8WVC0 666 aaPredicted RBP14.61□□□□□ -0.07
LDLR-205ENST00000557933 ARHGEF10O15013 1369 aa14.61□□□□□ -0.07
LDLR-205ENST00000557933 ZBTB22O15209 634 aa14.61□□□□□ -0.07
LDLR-205ENST00000557933 ATF3P18847 181 aa14.61□□□□□ -0.07
LDLR-205ENST00000557933 ZSCAN25Q6NSZ9 544 aa14.61□□□□□ -0.07
LDLR-205ENST00000557933 BRF1Q92994 677 aa14.61□□□□□ -0.07
LDLR-205ENST00000557933 ST7Q9NRC1 585 aa14.61□□□□□ -0.07
LDLR-205ENST00000557933 LETM1O95202 739 aaPredicted RBP14.6□□□□□ -0.07
LDLR-205ENST00000557933 ISM2Q6H9L7 571 aa14.6□□□□□ -0.07
LDLR-205ENST00000557933 ZNF530Q6P9A1 599 aaPredicted RBP14.6□□□□□ -0.07
LDLR-205ENST00000557933 NCOA5Q9HCD5 579 aaKnown RBP14.6□□□□□ -0.07
LDLR-205ENST00000557933 TOB2Q14106 344 aaPredicted RBP14.6□□□□□ -0.07
LDLR-205ENST00000557933 RUFY2Q8WXA3 655 aa14.6□□□□□ -0.07
LDLR-205ENST00000557933 AHDC1Q5TGY3 1603 aaPredicted RBP14.6□□□□□ -0.07
LDLR-205ENST00000557933 GOLGA6L6A8MZA4 724 aa14.59□□□□□ -0.07
LDLR-205ENST00000557933 H3BQV1 296 aa14.59□□□□□ -0.07
LDLR-205ENST00000557933 IFFO2Q5TF58 517 aa14.59□□□□□ -0.07
LDLR-205ENST00000557933 ZNF335Q9H4Z2 1342 aaPredicted RBP14.59□□□□□ -0.07
LDLR-205ENST00000557933 ADCY9O60503 1353 aa14.59□□□□□ -0.07
LDLR-205ENST00000557933 OTUD7BQ6GQQ9 843 aa14.59□□□□□ -0.07
LDLR-205ENST00000557933 DDX46Q7L014 1031 aaKnown RBP14.59□□□□□ -0.07
LDLR-205ENST00000557933 ZNF771Q7L3S4 317 aaPredicted RBP14.59□□□□□ -0.07
LDLR-205ENST00000557933 FAM208AQ9UK61 1670 aaKnown RBP14.58□□□□□ -0.07
LDLR-205ENST00000557933 ABCA3Q99758 1704 aa14.58□□□□□ -0.08
LDLR-205ENST00000557933 ZNF75DP51815 510 aa14.58□□□□□ -0.08
LDLR-205ENST00000557933 GTF2F1P35269 517 aaKnown RBP eCLIP14.58□□□□□ -0.082e-14■□□□□ 9.4
LDLR-205ENST00000557933 G3BP1Q13283 466 aaKnown RBP eCLIP14.58□□□□□ -0.08
LDLR-205ENST00000557933 EPHA10Q5JZY3 1008 aa14.58□□□□□ -0.08
LDLR-205ENST00000557933 KAZALD1Q96I82 304 aa14.58□□□□□ -0.08
LDLR-205ENST00000557933 BIN1O00499 593 aa14.57□□□□□ -0.08
LDLR-205ENST00000557933 TNS3Q68CZ2 1445 aa14.57□□□□□ -0.08
LDLR-205ENST00000557933 SH2B1Q9NRF2 756 aaPredicted RBP14.57□□□□□ -0.08
LDLR-205ENST00000557933 GJB4Q9NTQ9 266 aa14.57□□□□□ -0.08
LDLR-205ENST00000557933 KDRP35968 1356 aa14.57□□□□□ -0.08
LDLR-205ENST00000557933 ERICH4A6NGS2 130 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 ESCO1Q5FWF5 840 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 Q6ZUG5 572 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 NPHP3Q7Z494 1330 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 PLEKHG2Q9H7P9 1386 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 COL22A1Q8NFW1 1626 aaPredicted RBP14.56□□□□□ -0.08
LDLR-205ENST00000557933 AOX1Q06278 1338 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 PSME1Q06323 249 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 CCDC112Q8NEF3 446 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 MAP4K1Q92918 833 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 EVI5LQ96CN4 794 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 GPATCH3Q96I76 525 aa14.56□□□□□ -0.08
LDLR-205ENST00000557933 CGNQ9P2M7 1197 aaKnown RBP14.56□□□□□ -0.08
LDLR-205ENST00000557933 ATP5J2-PTCD1G3V325 749 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 PTCD1O75127 700 aaKnown RBP14.55□□□□□ -0.08
LDLR-205ENST00000557933 GORABQ5T7V8 394 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 GPHNQ9NQX3 736 aaPredicted RBP14.55□□□□□ -0.08
LDLR-205ENST00000557933 ZNF215Q9UL58 517 aaPredicted RBP14.55□□□□□ -0.08
LDLR-205ENST00000557933 RPS6KB1P23443 525 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 STK11IPQ8N1F8 1099 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 ZSCAN31Q96LW9 406 aaPredicted RBP14.55□□□□□ -0.08
LDLR-205ENST00000557933 TRERF1Q96PN7 1200 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 GOLPH3LQ9H4A5 285 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 LMO7Q8WWI1 1683 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 NCAPD2Q15021 1401 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 GOLGA6L19H0YKK7 550 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 HSP90AB3PQ58FF7 597 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 KCNH5Q8NCM2 988 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 LRRN4CLQ8ND94 238 aa14.55□□□□□ -0.08
LDLR-205ENST00000557933 APOBRQ0VD83 1088 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms