RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 NEFHP12036 1026 aa14.43□□□□□ -0.1
COL4A6-209ENST00000545689 ALS2CR12Q96Q35 445 aa14.43□□□□□ -0.1
COL4A6-209ENST00000545689 AOX1Q06278 1338 aa14.43□□□□□ -0.1
COL4A6-209ENST00000545689 SF3B2Q13435 895 aaKnown RBP14.43□□□□□ -0.1
COL4A6-209ENST00000545689 CTAGE1Q96RT6 745 aa14.43□□□□□ -0.1
COL4A6-209ENST00000545689 PAFAH1B1P43034 410 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 DNAI2Q9GZS0 605 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 CCDC152Q4G0S7 254 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 PPP4R3BQ5MIZ7 849 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 SHTN1A0MZ66 631 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 FAM193AP78312 1265 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 USP48Q86UV5 1035 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 BRF1Q92994 677 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 KAT14Q9H8E8 782 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 EIF4G3O43432 1585 aaKnown RBP14.42□□□□□ -0.1
COL4A6-209ENST00000545689 CALRP27797 417 aaKnown RBP14.42□□□□□ -0.1
COL4A6-209ENST00000545689 TSHZ3Q63HK5 1081 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 MRPS27Q92552 414 aaKnown RBP14.42□□□□□ -0.1
COL4A6-209ENST00000545689 CARD14Q9BXL6 1004 aa14.42□□□□□ -0.1
COL4A6-209ENST00000545689 GBP2P32456 591 aaPredicted RBP14.41□□□□□ -0.1
COL4A6-209ENST00000545689 ABCA5Q8WWZ7 1642 aa14.41□□□□□ -0.1
COL4A6-209ENST00000545689 RPGRQ92834 1020 aaKnown RBP14.41□□□□□ -0.1
COL4A6-209ENST00000545689 CRNKL1Q9BZJ0 848 aaKnown RBP14.41□□□□□ -0.1
COL4A6-209ENST00000545689 EDC4Q6P2E9 1401 aaKnown RBP14.41□□□□□ -0.1
COL4A6-209ENST00000545689 MTHFSDQ2M296 383 aaKnown RBP14.41□□□□□ -0.1
COL4A6-209ENST00000545689 KLF18A0A0U1RQI7 1052 aa14.41□□□□□ -0.1
COL4A6-209ENST00000545689 ATP5J2-PTCD1G3V325 749 aa14.41□□□□□ -0.1
COL4A6-209ENST00000545689 XAGE3Q8WTP9 111 aa14.41□□□□□ -0.1
COL4A6-209ENST00000545689 NAA15Q9BXJ9 866 aaKnown RBP14.41□□□□□ -0.1
COL4A6-209ENST00000545689 SYKP43405 635 aa14.41□□□□□ -0.1
COL4A6-209ENST00000545689 CEP135Q66GS9 1140 aa14.41□□□□□ -0.1
COL4A6-209ENST00000545689 ATL3Q6DD88 541 aa14.41□□□□□ -0.1
COL4A6-209ENST00000545689 PLEKHM2Q8IWE5 1019 aa14.41□□□□□ -0.1
COL4A6-209ENST00000545689 C16orf45Q96MC5 204 aaPredicted RBP14.41□□□□□ -0.1
COL4A6-209ENST00000545689 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.41□□□□□ -0.1
COL4A6-209ENST00000545689 GTPBP4Q9BZE4 634 aaKnown RBP14.4□□□□□ -0.1
COL4A6-209ENST00000545689 DISP1Q96F81 1524 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 KIF24Q5T7B8 1368 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 SPAG1Q07617 926 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 WTAPQ15007 396 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 SLC26A6Q9BXS9 759 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 CNPY2Q9Y2B0 182 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 ZBTB43O43298 467 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 FAM107BQ9H098 131 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 CENPHQ9H3R5 247 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 ZMYM3Q14202 1370 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 RLBP1P12271 317 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 TRIM21P19474 475 aaKnown RBP14.4□□□□□ -0.1
COL4A6-209ENST00000545689 STXBP4Q6ZWJ1 553 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 DNAJC5BQ9UF47 199 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 ATP7AQ04656 1500 aa14.4□□□□□ -0.1
COL4A6-209ENST00000545689 ENOX2Q16206 610 aaKnown RBP14.4□□□□□ -0.1
COL4A6-209ENST00000545689 ZGPATQ8N5A5 531 aaKnown RBP14.4□□□□□ -0.1
COL4A6-209ENST00000545689 HCLS1P14317 486 aaPredicted RBP14.39□□□□□ -0.11
COL4A6-209ENST00000545689 CCDC96Q2M329 555 aa14.39□□□□□ -0.11
COL4A6-209ENST00000545689 MICU3Q86XE3 530 aa14.39□□□□□ -0.11
COL4A6-209ENST00000545689 GNAT2P19087 354 aa14.39□□□□□ -0.11
COL4A6-209ENST00000545689 MTIF2P46199 727 aaKnown RBP14.39□□□□□ -0.11
COL4A6-209ENST00000545689 NPHP3Q7Z494 1330 aa14.39□□□□□ -0.11
COL4A6-209ENST00000545689 CEBPAP49715 358 aaPredicted RBP14.39□□□□□ -0.11
COL4A6-209ENST00000545689 LARP6Q9BRS8 491 aaKnown RBP14.39□□□□□ -0.11
COL4A6-209ENST00000545689 ATP2B3Q16720 1220 aa14.39□□□□□ -0.11
COL4A6-209ENST00000545689 ZCRB1Q8TBF4 217 aaKnown RBP14.39□□□□□ -0.11
COL4A6-209ENST00000545689 HOXB7P09629 217 aa14.39□□□□□ -0.11
COL4A6-209ENST00000545689 NBPF7P0C2Y1 421 aaPredicted RBP14.39□□□□□ -0.11
COL4A6-209ENST00000545689 XRCC6P12956 609 aaKnown RBP eCLIP14.39□□□□□ -0.11
COL4A6-209ENST00000545689 GPTP24298 496 aa14.39□□□□□ -0.11
COL4A6-209ENST00000545689 ESR2Q92731 530 aa14.39□□□□□ -0.11
COL4A6-209ENST00000545689 MSH6P52701 1360 aa14.39□□□□□ -0.11
COL4A6-209ENST00000545689 GNAQP50148 359 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 NMIQ13287 307 aaPredicted RBP14.38□□□□□ -0.11
COL4A6-209ENST00000545689 RNF123Q5XPI4 1314 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 GIMAP6Q6P9H5 292 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 Q6ZUG5 572 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 DDX46Q7L014 1031 aaKnown RBP14.38□□□□□ -0.11
COL4A6-209ENST00000545689 KDM2BQ8NHM5 1336 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 TSPY2A6NKD2 308 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 COPS6Q7L5N1 327 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 ALG1Q9BT22 464 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 USP26Q9BXU7 913 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 RTL9Q8NET4 1388 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 UBA7P41226 1012 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 BMS1Q14692 1282 aaKnown RBP14.38□□□□□ -0.11
COL4A6-209ENST00000545689 PPP4R3AQ6IN85 833 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 LUZP1Q86V48 1076 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 ARHGEF5Q12774 1597 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 CALM1P0DP23 149 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 CALM2P0DP24 149 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 CALM3P0DP25 149 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 CETN1Q12798 172 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 ANO6Q4KMQ2 910 aa14.38□□□□□ -0.11
COL4A6-209ENST00000545689 PAG1Q9NWQ8 432 aa14.37□□□□□ -0.11
COL4A6-209ENST00000545689 ZBTB7BO15156 539 aaPredicted RBP14.37□□□□□ -0.11
COL4A6-209ENST00000545689 EZRP15311 586 aaKnown RBP14.37□□□□□ -0.11
COL4A6-209ENST00000545689 HAND2P61296 217 aa14.37□□□□□ -0.11
COL4A6-209ENST00000545689 NECAB1Q8N987 351 aa14.37□□□□□ -0.11
COL4A6-209ENST00000545689 SNRKQ9NRH2 765 aa14.37□□□□□ -0.11
COL4A6-209ENST00000545689 TRMT1Q9NXH9 659 aaKnown RBP14.37□□□□□ -0.11
COL4A6-209ENST00000545689 BIN1O00499 593 aa14.37□□□□□ -0.11
COL4A6-209ENST00000545689 CHMLP26374 656 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms