RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TMEM87AQ8NBN3 555 aa17.88■□□□□ 0.45
USP28-214ENST00000545540 BICD2Q8TD16 824 aa17.88■□□□□ 0.45
USP28-214ENST00000545540 NCOA5Q9HCD5 579 aaKnown RBP17.88■□□□□ 0.45
USP28-214ENST00000545540 ARHGAP23Q9P227 1491 aa17.88■□□□□ 0.45
USP28-214ENST00000545540 TAF5LO75529 589 aa17.87■□□□□ 0.45
USP28-214ENST00000545540 RPS6KB1P23443 525 aa17.87■□□□□ 0.45
USP28-214ENST00000545540 KRT85P78386 507 aa17.87■□□□□ 0.45
USP28-214ENST00000545540 GLIPR1L2Q4G1C9 344 aa17.87■□□□□ 0.45
USP28-214ENST00000545540 Q6ZUG5 572 aa17.87■□□□□ 0.45
USP28-214ENST00000545540 PROSER2Q86WR7 435 aaPredicted RBP17.87■□□□□ 0.45
USP28-214ENST00000545540 USP42Q9H9J4 1324 aaKnown RBP17.87■□□□□ 0.45
USP28-214ENST00000545540 LTN1O94822 1766 aa17.87■□□□□ 0.45
USP28-214ENST00000545540 NR1I2O75469 434 aa17.87■□□□□ 0.45
USP28-214ENST00000545540 LMBR1LQ6UX01 489 aa17.87■□□□□ 0.45
USP28-214ENST00000545540 DRC7Q8IY82 874 aa17.87■□□□□ 0.45
USP28-214ENST00000545540 PRDM10Q9NQV6 1147 aa17.87■□□□□ 0.45
USP28-214ENST00000545540 SH2B1Q9NRF2 756 aaPredicted RBP17.87■□□□□ 0.45
USP28-214ENST00000545540 LRMPQ12912 555 aa17.86■□□□□ 0.45
USP28-214ENST00000545540 ZSCAN31Q96LW9 406 aaPredicted RBP17.86■□□□□ 0.45
USP28-214ENST00000545540 ANKARQ7Z5J8 1434 aa17.86■□□□□ 0.45
USP28-214ENST00000545540 GOLIM4O00461 696 aa17.86■□□□□ 0.45
USP28-214ENST00000545540 PTPN12Q05209 780 aaKnown RBP17.86■□□□□ 0.45
USP28-214ENST00000545540 KCNF1Q9H3M0 494 aa17.86■□□□□ 0.45
USP28-214ENST00000545540 SNRKQ9NRH2 765 aa17.86■□□□□ 0.45
USP28-214ENST00000545540 PTGS1P23219 599 aa17.86■□□□□ 0.45
USP28-214ENST00000545540 FUCA2Q9BTY2 467 aa17.86■□□□□ 0.45
USP28-214ENST00000545540 ANO6Q4KMQ2 910 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 TTC5Q8N0Z6 440 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 NUP62CLQ9H1M0 184 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 PDCL3Q9H2J4 239 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 MARF1Q9Y4F3 1742 aaKnown RBP17.85■□□□□ 0.45
USP28-214ENST00000545540 CYP21A2P08686 494 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 TNNI3KQ59H18 835 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 TNMDQ9H2S6 317 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 SLC52A2Q9HAB3 445 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 FPGT-TNNI3KV9GXZ4 949 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 SLIT1O75093 1534 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 PSMA5P28066 241 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 CSPP1Q1MSJ5 1256 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 RNF20Q5VTR2 975 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 ZBTB3Q9H5J0 574 aa17.85■□□□□ 0.45
USP28-214ENST00000545540 GPHNQ9NQX3 736 aaPredicted RBP17.85■□□□□ 0.45
USP28-214ENST00000545540 H3BQV1 296 aa17.84■□□□□ 0.45
USP28-214ENST00000545540 IFFO2Q5TF58 517 aa17.84■□□□□ 0.45
USP28-214ENST00000545540 SASS6Q6UVJ0 657 aa17.84■□□□□ 0.45
USP28-214ENST00000545540 TYRO3Q06418 890 aa17.84■□□□□ 0.45
USP28-214ENST00000545540 FAM184AQ8NB25 1140 aa17.84■□□□□ 0.45
USP28-214ENST00000545540 TM6SF1Q9BZW5 370 aa17.84■□□□□ 0.45
USP28-214ENST00000545540 DNAJC25Q9H1X3 360 aa17.84■□□□□ 0.45
USP28-214ENST00000545540 CCDC192P0DO97 292 aa17.84■□□□□ 0.45
USP28-214ENST00000545540 APOBRQ0VD83 1088 aa17.84■□□□□ 0.45
USP28-214ENST00000545540 PGBD1Q96JS3 809 aa17.84■□□□□ 0.45
USP28-214ENST00000545540 METTL22Q9BUU2 404 aaPredicted RBP17.84■□□□□ 0.45
USP28-214ENST00000545540 ERBB3P21860 1342 aa17.83■□□□□ 0.45
USP28-214ENST00000545540 MAP3K11Q16584 847 aa17.83■□□□□ 0.45
USP28-214ENST00000545540 TTLL5Q6EMB2 1281 aa17.83■□□□□ 0.45
USP28-214ENST00000545540 OTUD7BQ6GQQ9 843 aa17.83■□□□□ 0.45
USP28-214ENST00000545540 STOX1Q6ZVD7 989 aa17.83■□□□□ 0.45
USP28-214ENST00000545540 NEK1Q96PY6 1258 aa17.83■□□□□ 0.45
USP28-214ENST00000545540 MRVI1Q9Y6F6 885 aa17.83■□□□□ 0.45
USP28-214ENST00000545540 NPHP3Q7Z494 1330 aa17.83■□□□□ 0.44
USP28-214ENST00000545540 TTLL7Q6ZT98 887 aa17.83■□□□□ 0.44
USP28-214ENST00000545540 CYP27B1O15528 508 aa17.82■□□□□ 0.44
USP28-214ENST00000545540 HAND2P61296 217 aa17.82■□□□□ 0.44
USP28-214ENST00000545540 LEO1Q8WVC0 666 aaPredicted RBP17.82■□□□□ 0.44
USP28-214ENST00000545540 CACNA1FO60840 1977 aa17.82■□□□□ 0.44
USP28-214ENST00000545540 A1BGP04217 495 aa17.82■□□□□ 0.44
USP28-214ENST00000545540 PHKG2P15735 406 aa17.82■□□□□ 0.44
USP28-214ENST00000545540 PIBF1Q8WXW3 757 aa17.82■□□□□ 0.44
USP28-214ENST00000545540 NPHP4O75161 1426 aaPredicted RBP17.82■□□□□ 0.44
USP28-214ENST00000545540 NFAT5O94916 1531 aa17.82■□□□□ 0.44
USP28-214ENST00000545540 TATP17735 454 aaPredicted RBP17.81■□□□□ 0.44
USP28-214ENST00000545540 MCM5P33992 734 aa17.81■□□□□ 0.44
USP28-214ENST00000545540 LRRC24Q50LG9 513 aa17.81■□□□□ 0.44
USP28-214ENST00000545540 CCDC186Q7Z3E2 898 aa17.81■□□□□ 0.44
USP28-214ENST00000545540 TRIM5Q9C035 493 aa17.81■□□□□ 0.44
USP28-214ENST00000545540 CBX8Q9HC52 389 aa17.81■□□□□ 0.44
USP28-214ENST00000545540 GJB4Q9NTQ9 266 aa17.81■□□□□ 0.44
USP28-214ENST00000545540 EPB41L2O43491 1005 aaKnown RBP17.81■□□□□ 0.44
USP28-214ENST00000545540 SCRN1Q12765 414 aa17.81■□□□□ 0.44
USP28-214ENST00000545540 UVSSAQ2YD98 709 aa17.81■□□□□ 0.44
USP28-214ENST00000545540 PUS3Q9BZE2 481 aaKnown RBP17.81■□□□□ 0.44
USP28-214ENST00000545540 FKBP4Q02790 459 aaKnown RBP eCLIP17.8■□□□□ 0.44
USP28-214ENST00000545540 KCNB2Q92953 911 aa17.8■□□□□ 0.44
USP28-214ENST00000545540 LETM1O95202 739 aaPredicted RBP17.79■□□□□ 0.44
USP28-214ENST00000545540 RFX5P48382 616 aaPredicted RBP17.79■□□□□ 0.44
USP28-214ENST00000545540 CABP4P57796 275 aa17.79■□□□□ 0.44
USP28-214ENST00000545540 ARID5BQ14865 1188 aa17.79■□□□□ 0.44
USP28-214ENST00000545540 CHMP4AQ9BY43 222 aa17.79■□□□□ 0.44
USP28-214ENST00000545540 ZNF609O15014 1411 aa17.79■□□□□ 0.44
USP28-214ENST00000545540 HIP1O00291 1037 aa17.79■□□□□ 0.44
USP28-214ENST00000545540 SNRPA1P09661 255 aaKnown RBP17.78■□□□□ 0.44
USP28-214ENST00000545540 HEG1Q9ULI3 1381 aa17.78■□□□□ 0.44
USP28-214ENST00000545540 C16orf45Q96MC5 204 aaPredicted RBP17.78■□□□□ 0.44
USP28-214ENST00000545540 MED23Q9ULK4 1368 aa17.77■□□□□ 0.44
USP28-214ENST00000545540 PI16Q6UXB8 463 aa17.77■□□□□ 0.44
USP28-214ENST00000545540 KDM6AO15550 1401 aaPredicted RBP17.77■□□□□ 0.44
USP28-214ENST00000545540 FAM200AQ8TCP9 573 aa17.77■□□□□ 0.43
USP28-214ENST00000545540 GTF3C6Q969F1 213 aa17.77■□□□□ 0.43
USP28-214ENST00000545540 HDAC5Q9UQL6 1122 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms