RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SEPT12Q8IYM1 358 aa6.76□□□□□ -1.33
CLIP1-217ENST00000543205 BANK1Q8NDB2 785 aa6.76□□□□□ -1.33
CLIP1-217ENST00000543205 SPSB2Q99619 263 aa6.76□□□□□ -1.33
CLIP1-217ENST00000543205 CDCA7Q9BWT1 371 aaPredicted RBP6.76□□□□□ -1.33
CLIP1-217ENST00000543205 MYBBP1AQ9BQG0 1328 aaKnown RBP6.76□□□□□ -1.33
CLIP1-217ENST00000543205 RGPD5Q99666 1765 aa6.76□□□□□ -1.33
CLIP1-217ENST00000543205 USP17L8P0C7I0 530 aa6.76□□□□□ -1.33
CLIP1-217ENST00000543205 IL2RBP14784 551 aa6.76□□□□□ -1.33
CLIP1-217ENST00000543205 IL13P35225 146 aa6.76□□□□□ -1.33
CLIP1-217ENST00000543205 USHBP1Q8N6Y0 703 aa6.76□□□□□ -1.33
CLIP1-217ENST00000543205 ZNF516Q92618 1163 aa6.76□□□□□ -1.33
CLIP1-217ENST00000543205 CERS3Q8IU89 383 aa6.75□□□□□ -1.33
CLIP1-217ENST00000543205 NUDCQ9Y266 331 aa6.75□□□□□ -1.33
CLIP1-217ENST00000543205 GLI3P10071 1580 aa6.75□□□□□ -1.33
CLIP1-217ENST00000543205 U2SURPO15042 1029 aaKnown RBP6.74□□□□□ -1.33
CLIP1-217ENST00000543205 ADH1BP00325 375 aa6.74□□□□□ -1.33
CLIP1-217ENST00000543205 TATP17735 454 aaPredicted RBP6.74□□□□□ -1.33
CLIP1-217ENST00000543205 CTDSPL2Q05D32 466 aa6.74□□□□□ -1.33
CLIP1-217ENST00000543205 PDE3BQ13370 1112 aa6.74□□□□□ -1.33
CLIP1-217ENST00000543205 RAPGEF4Q8WZA2 1011 aa6.74□□□□□ -1.33
CLIP1-217ENST00000543205 SNRKQ9NRH2 765 aa6.74□□□□□ -1.33
CLIP1-217ENST00000543205 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.74□□□□□ -1.33
CLIP1-217ENST00000543205 EXOC5O00471 708 aa6.74□□□□□ -1.33
CLIP1-217ENST00000543205 DDB1Q16531 1140 aa6.74□□□□□ -1.33
CLIP1-217ENST00000543205 FAM208AQ9UK61 1670 aaKnown RBP6.73□□□□□ -1.33
CLIP1-217ENST00000543205 IGSF1Q8N6C5 1336 aa6.73□□□□□ -1.33
CLIP1-217ENST00000543205 RBM47A0AV96 593 aaKnown RBP6.73□□□□□ -1.33
CLIP1-217ENST00000543205 POM121CA8CG34 1229 aa6.73□□□□□ -1.33
CLIP1-217ENST00000543205 MSS51Q4VC12 460 aa6.73□□□□□ -1.33
CLIP1-217ENST00000543205 DIEXFQ68CQ4 756 aaKnown RBP6.73□□□□□ -1.33
CLIP1-217ENST00000543205 SULT6B1Q6IMI4 303 aa6.73□□□□□ -1.33
CLIP1-217ENST00000543205 KRT27Q7Z3Y8 459 aa6.73□□□□□ -1.33
CLIP1-217ENST00000543205 CALR3Q96L12 384 aaKnown RBP6.73□□□□□ -1.33
CLIP1-217ENST00000543205 V9GY48 417 aaPredicted RBP6.73□□□□□ -1.33
CLIP1-217ENST00000543205 HMOX1P09601 288 aa6.72□□□□□ -1.33
CLIP1-217ENST00000543205 U2AF1L5P0DN76 240 aaPredicted RBP6.72□□□□□ -1.33
CLIP1-217ENST00000543205 JUNDP17535 347 aa6.72□□□□□ -1.33
CLIP1-217ENST00000543205 U2AF1Q01081 240 aaKnown RBP eCLIP6.72□□□□□ -1.33
CLIP1-217ENST00000543205 FAM160A2Q8N612 972 aaPredicted RBP6.72□□□□□ -1.33
CLIP1-217ENST00000543205 PRDM9Q9NQV7 894 aa6.72□□□□□ -1.33
CLIP1-217ENST00000543205 COL3A1P02461 1466 aaPredicted RBP6.72□□□□□ -1.33
CLIP1-217ENST00000543205 DISP2A7MBM2 1401 aa6.72□□□□□ -1.33
CLIP1-217ENST00000543205 DESI1Q6ICB0 168 aa6.72□□□□□ -1.33
CLIP1-217ENST00000543205 ZCRB1Q8TBF4 217 aaKnown RBP6.72□□□□□ -1.33
CLIP1-217ENST00000543205 BRPF3Q9ULD4 1205 aa6.72□□□□□ -1.33
CLIP1-217ENST00000543205 PDE4CQ08493 712 aa6.71□□□□□ -1.33
CLIP1-217ENST00000543205 MTMR14Q8NCE2 650 aa6.71□□□□□ -1.33
CLIP1-217ENST00000543205 NKX2-3Q8TAU0 364 aa6.71□□□□□ -1.33
CLIP1-217ENST00000543205 DDX54Q8TDD1 881 aaKnown RBP6.71□□□□□ -1.33
CLIP1-217ENST00000543205 LRRN4Q8WUT4 740 aa6.71□□□□□ -1.33
CLIP1-217ENST00000543205 GLMNQ92990 594 aa6.71□□□□□ -1.33
CLIP1-217ENST00000543205 MRRFQ96E11 262 aaKnown RBP6.71□□□□□ -1.33
CLIP1-217ENST00000543205 SPATA32Q96LK8 384 aa6.71□□□□□ -1.33
CLIP1-217ENST00000543205 SLC6A16Q9GZN6 736 aa6.71□□□□□ -1.33
CLIP1-217ENST00000543205 SPG7Q9UQ90 795 aa6.71□□□□□ -1.33
CLIP1-217ENST00000543205 THSD7AQ9UPZ6 1657 aa6.71□□□□□ -1.34
CLIP1-217ENST00000543205 RGPD2P0DJD1 1756 aa6.71□□□□□ -1.34
CLIP1-217ENST00000543205 MEGF6O75095 1541 aa6.71□□□□□ -1.34
CLIP1-217ENST00000543205 WDR43Q15061 677 aaKnown RBP eCLIP6.71□□□□□ -1.34
CLIP1-217ENST00000543205 PLEKHO1Q53GL0 409 aaPredicted RBP6.71□□□□□ -1.34
CLIP1-217ENST00000543205 USTQ9Y2C2 406 aa6.71□□□□□ -1.34
CLIP1-217ENST00000543205 OVOS2A0A0G2JMS6 1433 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 NCAPD2Q15021 1401 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 PCDH11XQ9BZA7 1347 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 PCDH11YQ9BZA8 1340 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 NEFMP07197 916 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 AMOTQ4VCS5 1084 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 FAM182BQ5T319 152 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 FAM196AQ6ZSG2 479 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 MARCH10Q8NA82 808 aaPredicted RBP6.7□□□□□ -1.34
CLIP1-217ENST00000543205 PBXIP1Q96AQ6 731 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 PNNQ9H307 717 aaKnown RBP6.7□□□□□ -1.34
CLIP1-217ENST00000543205 MRS2Q9HD23 443 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 HMX1Q9NP08 348 aaPredicted RBP6.7□□□□□ -1.34
CLIP1-217ENST00000543205 TNS2Q63HR2 1409 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 KDRP35968 1356 aa6.7□□□□□ -1.34
CLIP1-217ENST00000543205 DXOO77932 396 aaKnown RBP6.69□□□□□ -1.34
CLIP1-217ENST00000543205 RFX1P22670 979 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 PRKAR2BP31323 418 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 LYPD8Q6UX82 237 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 ZNF592Q92610 1267 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 GDPD2Q9HCC8 539 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 PARP4Q9UKK3 1724 aaKnown RBP6.69□□□□□ -1.34
CLIP1-217ENST00000543205 PLEKHG2Q9H7P9 1386 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 S1PR4O95977 384 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 MMP16P51512 607 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 PTPRNQ16849 979 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 C1orf141Q5JVX7 400 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 ZNF530Q6P9A1 599 aaPredicted RBP6.69□□□□□ -1.34
CLIP1-217ENST00000543205 PRKD2Q9BZL6 878 aa6.69□□□□□ -1.34
CLIP1-217ENST00000543205 LRRC37A3O60309 1634 aa6.68□□□□□ -1.34
CLIP1-217ENST00000543205 RGPD1P0DJD0 1748 aa6.68□□□□□ -1.34
CLIP1-217ENST00000543205 WNK3Q9BYP7 1800 aa6.68□□□□□ -1.34
CLIP1-217ENST00000543205 CCDC184Q52MB2 194 aa6.68□□□□□ -1.34
CLIP1-217ENST00000543205 IFNL2Q8IZJ0 200 aa6.68□□□□□ -1.34
CLIP1-217ENST00000543205 PRM3Q9NNZ6 103 aa6.68□□□□□ -1.34
CLIP1-217ENST00000543205 CYP27B1O15528 508 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 HSP90AB1P08238 724 aaKnown RBP6.67□□□□□ -1.34
CLIP1-217ENST00000543205 PHKG2P15735 406 aa6.67□□□□□ -1.34
CLIP1-217ENST00000543205 SF3B2Q13435 895 aaKnown RBP6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms