RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 NR6A1Q15406 480 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 RGL3Q3MIN7 710 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 NUTM2GQ5VZR2 741 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 VASH1Q7L8A9 365 aaPredicted RBP6.86□□□□□ -1.31
CD44-218ENST00000525469 SH3RF1Q7Z6J0 888 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 SLC16A10Q8TF71 515 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 PRAM1Q96QH2 718 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 C1QTNF2Q9BXJ5 285 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 CARD14Q9BXL6 1004 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 ATP13A2Q9NQ11 1180 aa6.86□□□□□ -1.31
CD44-218ENST00000525469 SUPT16HQ9Y5B9 1047 aaKnown RBP6.86□□□□□ -1.31
CD44-218ENST00000525469 ATP7BP35670 1465 aa6.85□□□□□ -1.31
CD44-218ENST00000525469 AATKQ6ZMQ8 1374 aa6.85□□□□□ -1.31
CD44-218ENST00000525469 ITSN1Q15811 1721 aa6.85□□□□□ -1.31
CD44-218ENST00000525469 ZBTB7CA1YPR0 619 aa6.85□□□□□ -1.31
CD44-218ENST00000525469 YBX3P16989 372 aaKnown RBP eCLIP6.85□□□□□ -1.31
CD44-218ENST00000525469 PTF1AQ7RTS3 328 aa6.85□□□□□ -1.31
CD44-218ENST00000525469 DNAJC5GQ8N7S2 189 aa6.85□□□□□ -1.31
CD44-218ENST00000525469 BANK1Q8NDB2 785 aa6.85□□□□□ -1.31
CD44-218ENST00000525469 NLGN2Q8NFZ4 835 aa6.85□□□□□ -1.31
CD44-218ENST00000525469 ZNF592Q92610 1267 aa6.85□□□□□ -1.31
CD44-218ENST00000525469 LRRC37A3O60309 1634 aa6.84□□□□□ -1.31
CD44-218ENST00000525469 TOM1L2Q6ZVM7 507 aa6.84□□□□□ -1.31
CD44-218ENST00000525469 HIRIP3Q9BW71 556 aaPredicted RBP6.84□□□□□ -1.31
CD44-218ENST00000525469 CDCA7Q9BWT1 371 aaPredicted RBP6.84□□□□□ -1.31
CD44-218ENST00000525469 WWC3Q9ULE0 1092 aa6.84□□□□□ -1.31
CD44-218ENST00000525469 WDR90Q96KV7 1748 aa6.84□□□□□ -1.31
CD44-218ENST00000525469 CRB1P82279 1406 aa6.84□□□□□ -1.32
CD44-218ENST00000525469 GOLGB1Q14789 3259 aaKnown RBP6.83□□□□□ -1.32
CD44-218ENST00000525469 FSHRP23945 695 aa6.83□□□□□ -1.32
CD44-218ENST00000525469 WDR4P57081 412 aaKnown RBP6.83□□□□□ -1.32
CD44-218ENST00000525469 SCARF1Q14162 830 aa6.83□□□□□ -1.32
CD44-218ENST00000525469 NBPF20Q3BBV1 942 aa6.83□□□□□ -1.32
CD44-218ENST00000525469 ERFEQ4G0M1 354 aa6.83□□□□□ -1.32
CD44-218ENST00000525469 C4orf48Q5BLP8 95 aa6.83□□□□□ -1.32
CD44-218ENST00000525469 ABTB2Q8N961 1025 aa6.83□□□□□ -1.32
CD44-218ENST00000525469 PRM3Q9NNZ6 103 aa6.83□□□□□ -1.32
CD44-218ENST00000525469 QSER1Q2KHR3 1735 aa6.83□□□□□ -1.32
CD44-218ENST00000525469 WNK3Q9BYP7 1800 aa6.83□□□□□ -1.32
CD44-218ENST00000525469 LMO7Q8WWI1 1683 aa6.82□□□□□ -1.32
CD44-218ENST00000525469 EXOC5O00471 708 aa6.82□□□□□ -1.32
CD44-218ENST00000525469 TOMM70O94826 608 aa6.82□□□□□ -1.32
CD44-218ENST00000525469 UPP2O95045 317 aa6.82□□□□□ -1.32
CD44-218ENST00000525469 DHX9Q08211 1270 aaKnown RBP6.82□□□□□ -1.32
CD44-218ENST00000525469 MARCH10Q8NA82 808 aaPredicted RBP6.82□□□□□ -1.32
CD44-218ENST00000525469 KLRG1Q96E93 195 aa6.82□□□□□ -1.32
CD44-218ENST00000525469 TRIM47Q96LD4 638 aa6.82□□□□□ -1.32
CD44-218ENST00000525469 TFCP2L1Q9NZI6 479 aa6.82□□□□□ -1.32
CD44-218ENST00000525469 GMPR2Q9P2T1 348 aaKnown RBP6.82□□□□□ -1.32
CD44-218ENST00000525469 EMILIN1Q9Y6C2 1016 aa6.82□□□□□ -1.32
CD44-218ENST00000525469 CPDO75976 1380 aa6.82□□□□□ -1.32
CD44-218ENST00000525469 COL24A1Q17RW2 1714 aa6.81□□□□□ -1.32
CD44-218ENST00000525469 TULP4Q9NRJ4 1543 aa6.81□□□□□ -1.32
CD44-218ENST00000525469 COL5A2P05997 1499 aaPredicted RBP6.81□□□□□ -1.32
CD44-218ENST00000525469 NLRP13Q86W25 1043 aa6.81□□□□□ -1.32
CD44-218ENST00000525469 C16orf71Q8IYS4 520 aaPredicted RBP6.81□□□□□ -1.32
CD44-218ENST00000525469 JMYQ8N9B5 988 aa6.81□□□□□ -1.32
CD44-218ENST00000525469 HMX1Q9NP08 348 aaPredicted RBP6.81□□□□□ -1.32
CD44-218ENST00000525469 PGPEP1Q9NXJ5 209 aa6.81□□□□□ -1.32
CD44-218ENST00000525469 ZNF330Q9Y3S2 320 aaPredicted RBP6.81□□□□□ -1.32
CD44-218ENST00000525469 BCL9O00512 1426 aa6.81□□□□□ -1.32
CD44-218ENST00000525469 PIK3C2GO75747 1445 aa6.81□□□□□ -1.32
CD44-218ENST00000525469 ARHGEF28Q8N1W1 1705 aaKnown RBP6.81□□□□□ -1.32
CD44-218ENST00000525469 ADCY9O60503 1353 aa6.81□□□□□ -1.32
CD44-218ENST00000525469 BTAF1O14981 1849 aa6.8□□□□□ -1.32
CD44-218ENST00000525469 WASLO00401 505 aaPredicted RBP6.8□□□□□ -1.32
CD44-218ENST00000525469 ZIC2O95409 532 aaPredicted RBP6.8□□□□□ -1.32
CD44-218ENST00000525469 NEFLP07196 543 aa6.8□□□□□ -1.32
CD44-218ENST00000525469 TIMP2P16035 220 aa6.8□□□□□ -1.32
CD44-218ENST00000525469 ZNF827Q17R98 1081 aa6.8□□□□□ -1.32
CD44-218ENST00000525469 CCDC116Q8IYX3 515 aa6.8□□□□□ -1.32
CD44-218ENST00000525469 ACSBG1Q96GR2 724 aa6.8□□□□□ -1.32
CD44-218ENST00000525469 C14orf93Q9H972 538 aaKnown RBP6.8□□□□□ -1.32
CD44-218ENST00000525469 DACH1Q9UI36 760 aa6.8□□□□□ -1.32
CD44-218ENST00000525469 PRR36Q9H6K5 1346 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 TUBGCP6Q96RT7 1819 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 LOC105371045A0A1W2PR82 267 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 GCP02774 474 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 CSB-PGBD3P0DP91 1061 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 GRM5P41594 1212 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 CFAP70Q5T0N1 1121 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 DZIP3Q86Y13 1208 aaKnown RBP6.79□□□□□ -1.32
CD44-218ENST00000525469 ADAM32Q8TC27 787 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 TRAK1Q9UPV9 953 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 NDUFB9Q9Y6M9 179 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 NHSQ6T4R5 1651 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 BRD4O60885 1362 aaPredicted RBP6.79□□□□□ -1.32
CD44-218ENST00000525469 PAPPAQ13219 1627 aa6.79□□□□□ -1.32
CD44-218ENST00000525469 RGPD5Q99666 1765 aa6.78□□□□□ -1.32
CD44-218ENST00000525469 MRPL14Q6P1L8 145 aaKnown RBP6.78□□□□□ -1.32
CD44-218ENST00000525469 NUDT16Q96DE0 195 aaKnown RBP6.78□□□□□ -1.32
CD44-218ENST00000525469 KCTD15Q96SI1 283 aaPredicted RBP6.78□□□□□ -1.32
CD44-218ENST00000525469 CD2APQ9Y5K6 639 aa6.78□□□□□ -1.32
CD44-218ENST00000525469 PNPLA7Q6ZV29 1317 aa6.77□□□□□ -1.32
CD44-218ENST00000525469 ZBBXA8MT70 800 aa6.77□□□□□ -1.33
CD44-218ENST00000525469 POTECB2RU33 542 aa6.77□□□□□ -1.33
CD44-218ENST00000525469 BMP1P13497 986 aa6.77□□□□□ -1.33
CD44-218ENST00000525469 MCCD1P59942 119 aaPredicted RBP6.77□□□□□ -1.33
CD44-218ENST00000525469 HTRA3P83110 453 aa6.77□□□□□ -1.33
CD44-218ENST00000525469 SLC27A3Q5K4L6 730 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms