RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 RAB33AQ14088 237 aa9.34□□□□□ -0.91
NPHP3-211ENST00000515289 LHX8Q68G74 356 aa9.34□□□□□ -0.91
NPHP3-211ENST00000515289 ANKS3Q6ZW76 656 aa9.34□□□□□ -0.91
NPHP3-211ENST00000515289 ZFYVE28Q9HCC9 887 aa9.34□□□□□ -0.91
NPHP3-211ENST00000515289 BCS1LQ9Y276 419 aa9.34□□□□□ -0.91
NPHP3-211ENST00000515289 NESP48681 1621 aa9.34□□□□□ -0.91
NPHP3-211ENST00000515289 PLEKHD1A6NEE1 506 aa9.33□□□□□ -0.92
NPHP3-211ENST00000515289 U2SURPO15042 1029 aaKnown RBP9.33□□□□□ -0.92
NPHP3-211ENST00000515289 MICAL2O94851 1124 aa9.33□□□□□ -0.92
NPHP3-211ENST00000515289 PARNO95453 639 aaKnown RBP9.33□□□□□ -0.92
NPHP3-211ENST00000515289 CLN3Q13286 438 aa9.33□□□□□ -0.92
NPHP3-211ENST00000515289 HIF1AQ16665 826 aa9.33□□□□□ -0.92
NPHP3-211ENST00000515289 EHBP1Q8NDI1 1231 aa9.33□□□□□ -0.92
NPHP3-211ENST00000515289 MARVELD3Q96A59 401 aa9.33□□□□□ -0.92
NPHP3-211ENST00000515289 PGPEP1Q9NXJ5 209 aa9.33□□□□□ -0.92
NPHP3-211ENST00000515289 SNTG2Q9NY99 539 aa9.33□□□□□ -0.92
NPHP3-211ENST00000515289 KIF21BO75037 1637 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 PPP1R12AO14974 1030 aaPredicted RBP9.32□□□□□ -0.92
NPHP3-211ENST00000515289 ST18O60284 1047 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 ETFBP38117 255 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 SOX9P48436 509 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 NR5A1Q13285 461 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 RASA3Q14644 834 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 NXPE4Q6UWF7 544 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 PPARGC1BQ86YN6 1023 aaKnown RBP9.32□□□□□ -0.92
NPHP3-211ENST00000515289 DEPDC7Q96QD5 511 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 BCO2Q9BYV7 579 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 ADAMTS1Q9UHI8 967 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 PARP3Q9Y6F1 533 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 LAMC3Q9Y6N6 1575 aa9.32□□□□□ -0.92
NPHP3-211ENST00000515289 TGFBR3LH3BV60 316 aa9.31□□□□□ -0.92
NPHP3-211ENST00000515289 ADH1CP00326 375 aa9.31□□□□□ -0.92
NPHP3-211ENST00000515289 COL9A2Q14055 689 aaPredicted RBP9.31□□□□□ -0.92
NPHP3-211ENST00000515289 PDE12Q6L8Q7 609 aaKnown RBP9.31□□□□□ -0.92
NPHP3-211ENST00000515289 RPUSD2Q8IZ73 545 aaKnown RBP9.31□□□□□ -0.92
NPHP3-211ENST00000515289 HS3ST6Q96QI5 342 aa9.31□□□□□ -0.92
NPHP3-211ENST00000515289 NIFKQ9BYG3 293 aaKnown RBP9.31□□□□□ -0.92
NPHP3-211ENST00000515289 SLKQ9H2G2 1235 aaPredicted RBP9.31□□□□□ -0.92
NPHP3-211ENST00000515289 NPHS2Q9NP85 383 aa9.31□□□□□ -0.92
NPHP3-211ENST00000515289 EFR3BQ9Y2G0 817 aa9.31□□□□□ -0.92
NPHP3-211ENST00000515289 FNDC3AQ9Y2H6 1198 aaKnown RBP9.31□□□□□ -0.92
NPHP3-211ENST00000515289 RIPOR2Q9Y4F9 1068 aa9.31□□□□□ -0.92
NPHP3-211ENST00000515289 TNIKQ9UKE5 1360 aa9.31□□□□□ -0.92
NPHP3-211ENST00000515289 GOLGA3Q08378 1498 aa9.31□□□□□ -0.92
NPHP3-211ENST00000515289 CEP164Q9UPV0 1460 aa9.3□□□□□ -0.92
NPHP3-211ENST00000515289 GSTT1P30711 240 aa9.3□□□□□ -0.92
NPHP3-211ENST00000515289 CENPCQ03188 943 aa9.3□□□□□ -0.92
NPHP3-211ENST00000515289 PLEKHG6Q3KR16 790 aa9.3□□□□□ -0.92
NPHP3-211ENST00000515289 ZNF438Q7Z4V0 828 aa9.3□□□□□ -0.92
NPHP3-211ENST00000515289 IRF2BPLQ9H1B7 796 aa9.3□□□□□ -0.92
NPHP3-211ENST00000515289 GINM1Q9NU53 330 aa9.3□□□□□ -0.92
NPHP3-211ENST00000515289 PHACTR2O75167 634 aa9.29□□□□□ -0.92
NPHP3-211ENST00000515289 CDC45O75419 566 aa9.29□□□□□ -0.92
NPHP3-211ENST00000515289 ADH1AP07327 375 aa9.29□□□□□ -0.92
NPHP3-211ENST00000515289 HSP90AB2PQ58FF8 381 aa9.29□□□□□ -0.92
NPHP3-211ENST00000515289 IER5Q5VY09 327 aa9.29□□□□□ -0.92
NPHP3-211ENST00000515289 ANKRD13DQ6ZTN6 518 aa9.29□□□□□ -0.92
NPHP3-211ENST00000515289 RELL1Q8IUW5 271 aa9.29□□□□□ -0.92
NPHP3-211ENST00000515289 SLC52A1Q9NWF4 448 aa9.29□□□□□ -0.92
NPHP3-211ENST00000515289 MRVI1Q9Y6F6 885 aa9.29□□□□□ -0.92
NPHP3-211ENST00000515289 TLL2Q9Y6L7 1015 aa9.29□□□□□ -0.92
NPHP3-211ENST00000515289 POTEB3A0JP26 581 aa9.28□□□□□ -0.92
NPHP3-211ENST00000515289 EIF4A3P38919 411 aaKnown RBP9.28□□□□□ -0.92
NPHP3-211ENST00000515289 POTEBQ6S5H4 581 aa9.28□□□□□ -0.92
NPHP3-211ENST00000515289 GALNT12Q8IXK2 581 aa9.28□□□□□ -0.92
NPHP3-211ENST00000515289 HNRNPLLQ8WVV9 542 aaKnown RBP9.28□□□□□ -0.92
NPHP3-211ENST00000515289 EAF1Q96JC9 268 aaPredicted RBP9.28□□□□□ -0.92
NPHP3-211ENST00000515289 SUV39H2Q9H5I1 410 aa9.28□□□□□ -0.92
NPHP3-211ENST00000515289 CHPF2Q9P2E5 772 aa9.28□□□□□ -0.92
NPHP3-211ENST00000515289 PRKAG3Q9UGI9 489 aa9.28□□□□□ -0.92
NPHP3-211ENST00000515289 TTF2Q9UNY4 1162 aaKnown RBP9.28□□□□□ -0.92
NPHP3-211ENST00000515289 DNMBPQ6XZF7 1577 aa9.28□□□□□ -0.92
NPHP3-211ENST00000515289 FGD5Q6ZNL6 1462 aa9.28□□□□□ -0.92
NPHP3-211ENST00000515289 PRXQ9BXM0 1461 aa9.28□□□□□ -0.92
NPHP3-211ENST00000515289 FAM221BA6H8Z2 402 aa9.27□□□□□ -0.93
NPHP3-211ENST00000515289 GADD45BO75293 160 aaPredicted RBP9.27□□□□□ -0.93
NPHP3-211ENST00000515289 TXLNAP40222 546 aa9.27□□□□□ -0.93
NPHP3-211ENST00000515289 CHMP4BP1P59074 171 aa9.27□□□□□ -0.93
NPHP3-211ENST00000515289 GRM2Q14416 872 aa9.27□□□□□ -0.93
NPHP3-211ENST00000515289 ARSHQ5FYA8 562 aa9.27□□□□□ -0.93
NPHP3-211ENST00000515289 KDF1Q8NAX2 398 aaPredicted RBP9.27□□□□□ -0.93
NPHP3-211ENST00000515289 TMEM74Q96NL1 305 aa9.27□□□□□ -0.93
NPHP3-211ENST00000515289 NT5C1AQ9BXI3 368 aa9.27□□□□□ -0.93
NPHP3-211ENST00000515289 KCNQ5Q9NR82 932 aa9.27□□□□□ -0.93
NPHP3-211ENST00000515289 DDX56Q9NY93 547 aaKnown RBP9.27□□□□□ -0.93
NPHP3-211ENST00000515289 CEP162Q5TB80 1403 aa9.27□□□□□ -0.93
NPHP3-211ENST00000515289 TOPBP1Q92547 1522 aa9.26□□□□□ -0.93
NPHP3-211ENST00000515289 KIF27Q86VH2 1401 aa9.26□□□□□ -0.93
NPHP3-211ENST00000515289 LOC102724159A0A0B4J2E5 919 aa9.26□□□□□ -0.93
NPHP3-211ENST00000515289 RLBP1P12271 317 aa9.26□□□□□ -0.93
NPHP3-211ENST00000515289 PWP2Q15269 919 aaKnown RBP9.26□□□□□ -0.93
NPHP3-211ENST00000515289 RC3H1Q5TC82 1133 aaKnown RBP9.26□□□□□ -0.93
NPHP3-211ENST00000515289 NBPF10Q6P3W6 841 aaKnown RBP9.26□□□□□ -0.93
NPHP3-211ENST00000515289 RHPN1Q8TCX5 695 aa9.26□□□□□ -0.93
NPHP3-211ENST00000515289 RHBDD1Q8TEB9 315 aa9.26□□□□□ -0.93
NPHP3-211ENST00000515289 SH3TC2Q8TF17 1288 aa9.26□□□□□ -0.93
NPHP3-211ENST00000515289 ANKRD24Q8TF21 1146 aa9.26□□□□□ -0.93
NPHP3-211ENST00000515289 ZNF296Q8WUU4 475 aaPredicted RBP9.26□□□□□ -0.93
NPHP3-211ENST00000515289 APPBP2Q92624 585 aa9.26□□□□□ -0.93
NPHP3-211ENST00000515289 FANCLQ9NW38 375 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms