RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SOS2Q07890 1332 aaPredicted RBP8.01□□□□□ -1.13
UPF3B-203ENST00000478840 TTLL8A6PVC2 850 aa8□□□□□ -1.13
UPF3B-203ENST00000478840 IRS1P35568 1242 aa8□□□□□ -1.13
UPF3B-203ENST00000478840 VEGFBP49765 207 aa8□□□□□ -1.13
UPF3B-203ENST00000478840 KCNQ4P56696 695 aa8□□□□□ -1.13
UPF3B-203ENST00000478840 PI16Q6UXB8 463 aa8□□□□□ -1.13
UPF3B-203ENST00000478840 PMEPA1Q969W9 287 aa8□□□□□ -1.13
UPF3B-203ENST00000478840 ACBD3Q9H3P7 528 aa8□□□□□ -1.13
UPF3B-203ENST00000478840 DYRK1BQ9Y463 629 aa8□□□□□ -1.13
UPF3B-203ENST00000478840 XYLBO75191 536 aa7.99□□□□□ -1.13
UPF3B-203ENST00000478840 TAF1CQ15572 869 aaPredicted RBP7.99□□□□□ -1.13
UPF3B-203ENST00000478840 C6orf118Q5T5N4 469 aa7.99□□□□□ -1.13
UPF3B-203ENST00000478840 NLRP13Q86W25 1043 aa7.99□□□□□ -1.13
UPF3B-203ENST00000478840 ZNF654Q8IZM8 581 aa7.99□□□□□ -1.13
UPF3B-203ENST00000478840 ARMC5Q96C12 935 aa7.99□□□□□ -1.13
UPF3B-203ENST00000478840 SRA1Q9HD15 236 aaKnown RBP7.99□□□□□ -1.13
UPF3B-203ENST00000478840 ABI2Q9NYB9 513 aaPredicted RBP7.99□□□□□ -1.13
UPF3B-203ENST00000478840 F11P03951 625 aa7.98□□□□□ -1.13
UPF3B-203ENST00000478840 RHOQP17081 205 aa7.98□□□□□ -1.13
UPF3B-203ENST00000478840 RACK1P63244 317 aaKnown RBP7.98□□□□□ -1.13
UPF3B-203ENST00000478840 GNL2Q13823 731 aaKnown RBP7.98□□□□□ -1.13
UPF3B-203ENST00000478840 HS2ST1Q7LGA3 356 aa7.98□□□□□ -1.13
UPF3B-203ENST00000478840 CEP63Q96MT8 703 aa7.98□□□□□ -1.13
UPF3B-203ENST00000478840 SUV39H2Q9H5I1 410 aa7.98□□□□□ -1.13
UPF3B-203ENST00000478840 CAPN10Q9HC96 672 aa7.98□□□□□ -1.13
UPF3B-203ENST00000478840 NPHS2Q9NP85 383 aa7.98□□□□□ -1.13
UPF3B-203ENST00000478840 CNTN3Q9P232 1028 aa7.98□□□□□ -1.13
UPF3B-203ENST00000478840 EREGO14944 169 aa7.97□□□□□ -1.13
UPF3B-203ENST00000478840 SCARF1Q14162 830 aa7.97□□□□□ -1.13
UPF3B-203ENST00000478840 LBRQ14739 615 aaKnown RBP7.97□□□□□ -1.13
UPF3B-203ENST00000478840 C1orf127Q8N9H9 656 aa7.97□□□□□ -1.13
UPF3B-203ENST00000478840 BCO2Q9BYV7 579 aa7.97□□□□□ -1.13
UPF3B-203ENST00000478840 TANGO6Q9C0B7 1094 aa7.97□□□□□ -1.13
UPF3B-203ENST00000478840 AAASQ9NRG9 546 aa7.97□□□□□ -1.13
UPF3B-203ENST00000478840 USP17L7P0C7H9 530 aa7.96□□□□□ -1.14
UPF3B-203ENST00000478840 SMCPP49901 116 aaPredicted RBP7.96□□□□□ -1.14
UPF3B-203ENST00000478840 ZNF394Q53GI3 561 aa7.96□□□□□ -1.14
UPF3B-203ENST00000478840 MEI1Q5TIA1 1274 aa7.96□□□□□ -1.14
UPF3B-203ENST00000478840 KIAA0319Q5VV43 1072 aa7.96□□□□□ -1.14
UPF3B-203ENST00000478840 NXPE4Q6UWF7 544 aa7.96□□□□□ -1.14
UPF3B-203ENST00000478840 USP48Q86UV5 1035 aa7.96□□□□□ -1.14
UPF3B-203ENST00000478840 ANKRD24Q8TF21 1146 aa7.96□□□□□ -1.14
UPF3B-203ENST00000478840 BRD7Q9NPI1 651 aa7.96□□□□□ -1.14
UPF3B-203ENST00000478840 PRKAG2Q9UGJ0 569 aa7.96□□□□□ -1.14
UPF3B-203ENST00000478840 GJA3Q9Y6H8 435 aa7.96□□□□□ -1.14
UPF3B-203ENST00000478840 TNNI2P48788 182 aa7.95□□□□□ -1.14
UPF3B-203ENST00000478840 ERMP1Q7Z2K6 904 aa7.95□□□□□ -1.14
UPF3B-203ENST00000478840 ZCCHC2Q9C0B9 1178 aaKnown RBP7.95□□□□□ -1.14
UPF3B-203ENST00000478840 PPP1R1BQ9UD71 204 aaPredicted RBP7.95□□□□□ -1.14
UPF3B-203ENST00000478840 EFSO43281 561 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 FAM157BP0CG42 384 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 GSTT1P30711 240 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 GRM2Q14416 872 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 CTC1Q2NKJ3 1217 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 TRIM46Q7Z4K8 759 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 PGBD3Q8N328 593 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 GLIS3Q8NEA6 775 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 NOC4LQ9BVI4 516 aaKnown RBP7.94□□□□□ -1.14
UPF3B-203ENST00000478840 RUBCNLQ9H714 662 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 GGT7Q9UJ14 662 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 KCNH4Q9UQ05 1017 aa7.94□□□□□ -1.14
UPF3B-203ENST00000478840 AXIN1O15169 862 aa7.93□□□□□ -1.14
UPF3B-203ENST00000478840 GADD45BO75293 160 aaPredicted RBP7.93□□□□□ -1.14
UPF3B-203ENST00000478840 POLR3DP05423 398 aaPredicted RBP7.93□□□□□ -1.14
UPF3B-203ENST00000478840 CES1P23141 567 aa7.93□□□□□ -1.14
UPF3B-203ENST00000478840 GJA8P48165 433 aa7.93□□□□□ -1.14
UPF3B-203ENST00000478840 EFHC2Q5JST6 749 aa7.93□□□□□ -1.14
UPF3B-203ENST00000478840 TTC39BQ5VTQ0 682 aaPredicted RBP7.93□□□□□ -1.14
UPF3B-203ENST00000478840 PRPF40BQ6NWY9 871 aaKnown RBP7.93□□□□□ -1.14
UPF3B-203ENST00000478840 GPAMQ9HCL2 828 aa7.93□□□□□ -1.14
UPF3B-203ENST00000478840 CUEDC1Q9NWM3 386 aaPredicted RBP7.93□□□□□ -1.14
UPF3B-203ENST00000478840 TRAK1Q9UPV9 953 aa7.93□□□□□ -1.14
UPF3B-203ENST00000478840 INPP5FQ9Y2H2 1132 aa7.93□□□□□ -1.14
UPF3B-203ENST00000478840 PCDHGB7Q9Y5F8 929 aa7.93□□□□□ -1.14
UPF3B-203ENST00000478840 FIGNL2A6NMB9 653 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 EDN3P14138 238 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 ATP2B1P20020 1258 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 LAMC2Q13753 1193 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 ZNF787Q6DD87 383 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 FIGNL1Q6PIW4 674 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 FAM177A1Q8N128 213 aaPredicted RBP7.92□□□□□ -1.14
UPF3B-203ENST00000478840 C3orf58Q8NDZ4 430 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 OR13H1Q8NG92 308 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 GSX2Q9BZM3 304 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 EFCC1Q9HA90 598 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 DNMT3LQ9UJW3 386 aa7.92□□□□□ -1.14
UPF3B-203ENST00000478840 SENP3-EIF4A1A0A087X0R7 540 aa7.91□□□□□ -1.14
UPF3B-203ENST00000478840 A0A1W2PP55 124 aa7.91□□□□□ -1.14
UPF3B-203ENST00000478840 BMP1P13497 986 aa7.91□□□□□ -1.14
UPF3B-203ENST00000478840 ARID5AQ03989 594 aa7.91□□□□□ -1.14
UPF3B-203ENST00000478840 CCINQ13939 588 aa7.91□□□□□ -1.14
UPF3B-203ENST00000478840 UBAP2LQ14157 1087 aaKnown RBP7.91□□□□□ -1.14
UPF3B-203ENST00000478840 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.91□□□□□ -1.142e-7■■□□□ 13.1
UPF3B-203ENST00000478840 PEAR1Q5VY43 1037 aaPredicted RBP7.91□□□□□ -1.14
UPF3B-203ENST00000478840 CRIPAKQ8N1N5 446 aa7.91□□□□□ -1.14
UPF3B-203ENST00000478840 RSRP1Q9BUV0 290 aa7.91□□□□□ -1.14
UPF3B-203ENST00000478840 PPP4R2Q9NY27 417 aa7.91□□□□□ -1.14
UPF3B-203ENST00000478840 SALL4Q9UJQ4 1053 aa7.91□□□□□ -1.14
UPF3B-203ENST00000478840 CYP2E1P05181 493 aaPredicted RBP7.9□□□□□ -1.14
UPF3B-203ENST00000478840 XRCC5P13010 732 aaKnown RBP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms