RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	SOX11	P35716	441 aa		6.52	□□□□□ -1.37
PTCD3-212	ENST00000477520	HIRA	P54198	1017 aa	Predicted RBP	6.52	□□□□□ -1.37
PTCD3-212	ENST00000477520	PSMA6	P60900	246 aa	Known RBP	6.52	□□□□□ -1.37
PTCD3-212	ENST00000477520	MEGF10	Q96KG7	1140 aa		6.52	□□□□□ -1.37
PTCD3-212	ENST00000477520	KIAA1024	Q9UPX6	916 aa		6.52	□□□□□ -1.37
PTCD3-212	ENST00000477520	EIF4G3	O43432	1585 aa	Known RBP	6.52	□□□□□ -1.37
PTCD3-212	ENST00000477520	ABCA5	Q8WWZ7	1642 aa		6.51	□□□□□ -1.37
PTCD3-212	ENST00000477520	DEK	P35659	375 aa	Known RBP	6.51	□□□□□ -1.37
PTCD3-212	ENST00000477520	COL17A1	Q9UMD9	1497 aa	Predicted RBP	6.51	□□□□□ -1.37
PTCD3-212	ENST00000477520	ERICH3	Q5RHP9	1530 aa		6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	MAGI1	Q96QZ7	1491 aa	Predicted RBP	6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	ZBTB7B	O15156	539 aa	Predicted RBP	6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	LZTS3	O60299	673 aa	Predicted RBP	6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	RGS9	O75916	674 aa	Predicted RBP	6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	PLAUR	Q03405	335 aa		6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	GRIK5	Q16478	980 aa		6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	GLIPR1L2	Q4G1C9	344 aa		6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	BTLA	Q7Z6A9	289 aa		6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	FBXO11	Q86XK2	927 aa		6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	TPCN2	Q8NHX9	752 aa		6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	GSX2	Q9BZM3	304 aa		6.5	□□□□□ -1.37
PTCD3-212	ENST00000477520	PBRM1	Q86U86	1689 aa		6.49	□□□□□ -1.37
PTCD3-212	ENST00000477520	USP17L5	A8MUK1	530 aa		6.49	□□□□□ -1.37
PTCD3-212	ENST00000477520	MSL1	Q68DK7	614 aa		6.49	□□□□□ -1.37
PTCD3-212	ENST00000477520	PRR23C	Q6ZRP0	262 aa		6.49	□□□□□ -1.37
PTCD3-212	ENST00000477520	NFATC2IP	Q8NCF5	419 aa		6.49	□□□□□ -1.37
PTCD3-212	ENST00000477520	PCMTD2	Q9NV79	361 aa		6.49	□□□□□ -1.37
PTCD3-212	ENST00000477520	CDK11A	Q9UQ88	783 aa	Predicted RBP	6.49	□□□□□ -1.37
PTCD3-212	ENST00000477520	C21orf2	O43822	256 aa		6.48	□□□□□ -1.37
PTCD3-212	ENST00000477520	CHMP7	Q8WUX9	453 aa	Predicted RBP	6.48	□□□□□ -1.37
PTCD3-212	ENST00000477520	ALG2	Q9H553	416 aa		6.48	□□□□□ -1.37
PTCD3-212	ENST00000477520	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	6.48	□□□□□ -1.37
PTCD3-212	ENST00000477520	FHAD1	B1AJZ9	1412 aa		6.48	□□□□□ -1.37
PTCD3-212	ENST00000477520	CUL7	Q14999	1698 aa		6.48	□□□□□ -1.37
PTCD3-212	ENST00000477520	SNAPC4	Q5SXM2	1469 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	CARMIL1	Q5VZK9	1371 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	RUSC2	Q8N2Y8	1516 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	CPB1	P15086	417 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	NFKB1	P19838	968 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	SSTR4	P31391	388 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	CLDN10	P78369	228 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	CCDC102B	Q68D86	513 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	FAM35A	Q86V20	835 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	ALDH16A1	Q8IZ83	802 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	DTWD1	Q8N5C7	304 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	LPIN3	Q9BQK8	851 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	SYNJ2	O15056	1496 aa		6.47	□□□□□ -1.37
PTCD3-212	ENST00000477520	PAX4	O43316	350 aa		6.46	□□□□□ -1.38
PTCD3-212	ENST00000477520	DEAF1	O75398	565 aa	Predicted RBP	6.46	□□□□□ -1.38
PTCD3-212	ENST00000477520	GRN	P28799	593 aa	Known RBP	6.46	□□□□□ -1.38
PTCD3-212	ENST00000477520	PERM1	Q5SV97	790 aa		6.46	□□□□□ -1.38
PTCD3-212	ENST00000477520	FMNL2	Q96PY5	1086 aa		6.46	□□□□□ -1.38
PTCD3-212	ENST00000477520	ADAMTS12	P58397	1594 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	ZBTB42	B2RXF5	422 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	PPP1R12B	O60237	982 aa	Predicted RBP	6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	FST	P19883	344 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	CD97	P48960	835 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	CCIN	Q13939	588 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	IGF2-AS	Q6U949	168 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	TSEN2	Q8NCE0	465 aa	Known RBP	6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	PNMA5	Q96PV4	448 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	EFCC1	Q9HA90	598 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	USP35	Q9P2H5	1018 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	CHMP3	Q9Y3E7	222 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	RAPGEF2	Q9Y4G8	1499 aa		6.45	□□□□□ -1.38
PTCD3-212	ENST00000477520	ALX3	O95076	343 aa		6.44	□□□□□ -1.38
PTCD3-212	ENST00000477520	MED26	O95402	600 aa		6.44	□□□□□ -1.38
PTCD3-212	ENST00000477520	DZIP1L	Q8IYY4	767 aa	Known RBP	6.44	□□□□□ -1.38
PTCD3-212	ENST00000477520	BCAN	Q96GW7	911 aa		6.44	□□□□□ -1.38
PTCD3-212	ENST00000477520	KRTAP4-7	Q9BYR0	210 aa		6.44	□□□□□ -1.38
PTCD3-212	ENST00000477520	ZFAT	Q9P243	1243 aa		6.44	□□□□□ -1.38
PTCD3-212	ENST00000477520	BCS1L	Q9Y276	419 aa		6.44	□□□□□ -1.38
PTCD3-212	ENST00000477520	GRIN2A	Q12879	1464 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	PRX	Q9BXM0	1461 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	DLL1	O00548	723 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	COBL	O75128	1261 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	TXK	P42681	527 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	MLLT1	Q03111	559 aa	Predicted RBP	6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	MCM6	Q14566	821 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	TRIM50	Q86XT4	487 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	WFDC8	Q8IUA0	241 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	NGLY1	Q96IV0	654 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	C2orf49	Q9BVC5	232 aa	Predicted RBP	6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	FRRS1L	Q9P0K9	344 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	DMGDH	Q9UI17	866 aa	Known RBP	6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520	COG6	Q9Y2V7	657 aa		6.43	□□□□□ -1.38
PTCD3-212	ENST00000477520		M0R2N6	131 aa		6.42	□□□□□ -1.38
PTCD3-212	ENST00000477520	DKK1	O94907	266 aa		6.42	□□□□□ -1.38
PTCD3-212	ENST00000477520	LCE1D	Q5T752	114 aa		6.42	□□□□□ -1.38
PTCD3-212	ENST00000477520	PKNOX2	Q96KN3	472 aa		6.42	□□□□□ -1.38
PTCD3-212	ENST00000477520	OAS3	Q9Y6K5	1087 aa	Known RBP	6.42	□□□□□ -1.38
PTCD3-212	ENST00000477520	KIF21B	O75037	1637 aa		6.42	□□□□□ -1.38
PTCD3-212	ENST00000477520	ATAD2	Q6PL18	1390 aa		6.42	□□□□□ -1.38
PTCD3-212	ENST00000477520	CHD1	O14646	1710 aa		6.42	□□□□□ -1.38
PTCD3-212	ENST00000477520	GOLGA3	Q08378	1498 aa		6.41	□□□□□ -1.38
PTCD3-212	ENST00000477520	USP17L3	A6NCW0	530 aa		6.41	□□□□□ -1.38
PTCD3-212	ENST00000477520	USP17L4	A6NCW7	530 aa		6.41	□□□□□ -1.38
PTCD3-212	ENST00000477520	CCER2	I3L3R5	266 aa		6.41	□□□□□ -1.38
PTCD3-212	ENST00000477520	MAP3K6	O95382	1288 aa		6.41	□□□□□ -1.38
PTCD3-212	ENST00000477520	UBTF	P17480	764 aa	Known RBP	6.41	□□□□□ -1.38

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