RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 PIP4K2BP78356 416 aa14.24□□□□□ -0.13
SMPD4-213ENST00000454468 GTF2E1P29083 439 aaPredicted RBP14.23□□□□□ -0.13
SMPD4-213ENST00000454468 METTL24Q5JXM2 366 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 CKAP2LQ8IYA6 745 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 SPC24Q8NBT2 197 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 SALL3Q9BXA9 1300 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 HCLS1P14317 486 aaPredicted RBP14.23□□□□□ -0.13
SMPD4-213ENST00000454468 CCDC173Q0VFZ6 552 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 CHMP4CQ96CF2 233 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 ZNF830Q96NB3 372 aaPredicted RBP14.23□□□□□ -0.13
SMPD4-213ENST00000454468 KNDC1Q76NI1 1749 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 PHF14O94880 888 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 COL9A3Q14050 684 aaPredicted RBP14.23□□□□□ -0.13
SMPD4-213ENST00000454468 CCDC158Q5M9N0 1113 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 BRINP3Q76B58 766 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 USP25Q9UHP3 1055 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 PIK3C2AO00443 1686 aa14.23□□□□□ -0.13
SMPD4-213ENST00000454468 C1orf167Q5SNV9 1468 aa14.22□□□□□ -0.13
SMPD4-213ENST00000454468 AKAP12Q02952 1782 aa14.22□□□□□ -0.13
SMPD4-213ENST00000454468 PLBD2Q8NHP8 589 aa14.22□□□□□ -0.13
SMPD4-213ENST00000454468 TRMT112Q9UI30 125 aaKnown RBP14.22□□□□□ -0.13
SMPD4-213ENST00000454468 PTPN12Q05209 780 aaKnown RBP14.22□□□□□ -0.13
SMPD4-213ENST00000454468 BICDL1Q6ZP65 573 aa14.22□□□□□ -0.13
SMPD4-213ENST00000454468 TPCN1Q9ULQ1 816 aa14.22□□□□□ -0.13
SMPD4-213ENST00000454468 GNL2Q13823 731 aaKnown RBP14.22□□□□□ -0.13
SMPD4-213ENST00000454468 LDHAL6AQ6ZMR3 332 aa14.22□□□□□ -0.13
SMPD4-213ENST00000454468 Q6ZUG5 572 aa14.22□□□□□ -0.13
SMPD4-213ENST00000454468 NEK1Q96PY6 1258 aa14.22□□□□□ -0.13
SMPD4-213ENST00000454468 JAK2O60674 1132 aa14.21□□□□□ -0.13
SMPD4-213ENST00000454468 IFIT5Q13325 482 aaKnown RBP14.21□□□□□ -0.13
SMPD4-213ENST00000454468 IQSEC3Q9UPP2 1182 aaPredicted RBP14.21□□□□□ -0.13
SMPD4-213ENST00000454468 NBPF26B4DH59 902 aa14.21□□□□□ -0.13
SMPD4-213ENST00000454468 F13A1P00488 732 aa14.21□□□□□ -0.13
SMPD4-213ENST00000454468 NBPF14Q5TI25 921 aa14.21□□□□□ -0.13
SMPD4-213ENST00000454468 NBPF10Q6P3W6 841 aaKnown RBP14.21□□□□□ -0.13
SMPD4-213ENST00000454468 NBPF15Q8N660 670 aa14.21□□□□□ -0.13
SMPD4-213ENST00000454468 AOX1Q06278 1338 aa14.21□□□□□ -0.13
SMPD4-213ENST00000454468 INTS4Q96HW7 963 aaKnown RBP14.21□□□□□ -0.14
SMPD4-213ENST00000454468 R3HCC1Q9Y3T6 440 aaKnown RBP14.21□□□□□ -0.14
SMPD4-213ENST00000454468 A0A1B0GUL7 405 aa14.2□□□□□ -0.14
SMPD4-213ENST00000454468 PI16Q6UXB8 463 aa14.2□□□□□ -0.14
SMPD4-213ENST00000454468 ZSCAN31Q96LW9 406 aaPredicted RBP14.2□□□□□ -0.14
SMPD4-213ENST00000454468 CPLX1O14810 134 aa14.2□□□□□ -0.14
SMPD4-213ENST00000454468 STARD3NLO95772 234 aa14.2□□□□□ -0.14
SMPD4-213ENST00000454468 RRP12Q5JTH9 1297 aaKnown RBP14.2□□□□□ -0.14
SMPD4-213ENST00000454468 NCOA5Q9HCD5 579 aaKnown RBP14.2□□□□□ -0.14
SMPD4-213ENST00000454468 PAG1Q9NWQ8 432 aa14.2□□□□□ -0.14
SMPD4-213ENST00000454468 KRT85P78386 507 aa14.19□□□□□ -0.14
SMPD4-213ENST00000454468 SF3A1Q15459 793 aaKnown RBP14.19□□□□□ -0.14
SMPD4-213ENST00000454468 ZRSR1Q15695 479 aaKnown RBP14.19□□□□□ -0.14
SMPD4-213ENST00000454468 VPS53Q5VIR6 699 aa14.19□□□□□ -0.14
SMPD4-213ENST00000454468 TTLL5Q6EMB2 1281 aa14.19□□□□□ -0.14
SMPD4-213ENST00000454468 LRSAM1Q6UWE0 723 aa14.19□□□□□ -0.14
SMPD4-213ENST00000454468 SPATA32Q96LK8 384 aa14.19□□□□□ -0.14
SMPD4-213ENST00000454468 APOBRQ0VD83 1088 aa14.19□□□□□ -0.14
SMPD4-213ENST00000454468 MCMDC2Q4G0Z9 681 aa14.19□□□□□ -0.14
SMPD4-213ENST00000454468 CDC37L1Q7L3B6 337 aa14.19□□□□□ -0.14
SMPD4-213ENST00000454468 RALYLQ86SE5 291 aaKnown RBP14.19□□□□□ -0.14
SMPD4-213ENST00000454468 CCDC144CPQ8IYA2 1237 aa14.19□□□□□ -0.14
SMPD4-213ENST00000454468 PCDH11XQ9BZA7 1347 aa14.18□□□□□ -0.14
SMPD4-213ENST00000454468 PCDH11YQ9BZA8 1340 aa14.18□□□□□ -0.14
SMPD4-213ENST00000454468 CUL4AQ13619 759 aa14.18□□□□□ -0.14
SMPD4-213ENST00000454468 CSPP1Q1MSJ5 1256 aa14.18□□□□□ -0.14
SMPD4-213ENST00000454468 ISY1Q9ULR0 285 aaKnown RBP14.18□□□□□ -0.14
SMPD4-213ENST00000454468 NCOA3Q9Y6Q9 1424 aa14.18□□□□□ -0.14
SMPD4-213ENST00000454468 CCDC82Q8N4S0 544 aa14.18□□□□□ -0.14
SMPD4-213ENST00000454468 SH2B1Q9NRF2 756 aaPredicted RBP14.18□□□□□ -0.14
SMPD4-213ENST00000454468 SPATA31A3Q5VYP0 1347 aa14.18□□□□□ -0.14
SMPD4-213ENST00000454468 PDE4CQ08493 712 aa14.18□□□□□ -0.14
SMPD4-213ENST00000454468 ERBB4Q15303 1308 aa14.17□□□□□ -0.14
SMPD4-213ENST00000454468 SNAP23O00161 211 aa14.17□□□□□ -0.14
SMPD4-213ENST00000454468 ADORA1P30542 326 aa14.17□□□□□ -0.14
SMPD4-213ENST00000454468 EXOC5O00471 708 aa14.17□□□□□ -0.14
SMPD4-213ENST00000454468 KCNQ4P56696 695 aa14.17□□□□□ -0.14
SMPD4-213ENST00000454468 RBM10P98175 930 aaKnown RBP14.17□□□□□ -0.14
SMPD4-213ENST00000454468 MTX1Q13505 466 aa14.17□□□□□ -0.14
SMPD4-213ENST00000454468 ANKRD1Q15327 319 aa14.17□□□□□ -0.14
SMPD4-213ENST00000454468 VIRMAQ69YN4 1812 aaKnown RBP14.17□□□□□ -0.14
SMPD4-213ENST00000454468 CYP2E1P05181 493 aaPredicted RBP14.17□□□□□ -0.14
SMPD4-213ENST00000454468 PDCP20941 246 aa14.17□□□□□ -0.14
SMPD4-213ENST00000454468 KIAA2012Q0VF49 1180 aa14.17□□□□□ -0.14
SMPD4-213ENST00000454468 RXRAP19793 462 aa14.16□□□□□ -0.14
SMPD4-213ENST00000454468 ATP2B1P20020 1258 aa14.16□□□□□ -0.14
SMPD4-213ENST00000454468 NFXL1Q6ZNB6 911 aa14.16□□□□□ -0.14
SMPD4-213ENST00000454468 OTUD7BQ6GQQ9 843 aa14.16□□□□□ -0.14
SMPD4-213ENST00000454468 MAP4K1Q92918 833 aa14.16□□□□□ -0.14
SMPD4-213ENST00000454468 EYA2O00167 538 aa14.16□□□□□ -0.14
SMPD4-213ENST00000454468 IL15P40933 162 aaPredicted RBP14.16□□□□□ -0.14
SMPD4-213ENST00000454468 A0A0G2JLW4 131 aa14.15□□□□□ -0.14
SMPD4-213ENST00000454468 TAF5LO75529 589 aa14.15□□□□□ -0.14
SMPD4-213ENST00000454468 RPS6KB1P23443 525 aa14.15□□□□□ -0.14
SMPD4-213ENST00000454468 TRDNQ13061 729 aa14.15□□□□□ -0.14
SMPD4-213ENST00000454468 NECTIN1Q15223 517 aa14.15□□□□□ -0.14
SMPD4-213ENST00000454468 ZSCAN30Q86W11 494 aa14.15□□□□□ -0.14
SMPD4-213ENST00000454468 ZSWIM6Q9HCJ5 1215 aa14.15□□□□□ -0.14
SMPD4-213ENST00000454468 COPRSQ9NQ92 184 aa14.15□□□□□ -0.14
SMPD4-213ENST00000454468 MEGF6O75095 1541 aa14.15□□□□□ -0.14
SMPD4-213ENST00000454468 MPHOSPH8Q99549 860 aa14.15□□□□□ -0.14
SMPD4-213ENST00000454468 U3KPZ7 1027 aaPredicted RBP14.15□□□□□ -0.14
SMPD4-213ENST00000454468 POLR3DP05423 398 aaPredicted RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms