RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	BABAM1	Q9NWV8	329 aa		11.31	□□□□□ -0.6
RFX3-209	ENST00000451859	DDX60	Q8IY21	1712 aa	Known RBP	11.31	□□□□□ -0.6
RFX3-209	ENST00000451859	WDR90	Q96KV7	1748 aa		11.31	□□□□□ -0.6
RFX3-209	ENST00000451859	CHL1	O00533	1208 aa		11.3	□□□□□ -0.6
RFX3-209	ENST00000451859	RGL2	O15211	777 aa		11.3	□□□□□ -0.6
RFX3-209	ENST00000451859	NPR1	P16066	1061 aa		11.3	□□□□□ -0.6
RFX3-209	ENST00000451859	PDIA6	Q15084	440 aa		11.3	□□□□□ -0.6
RFX3-209	ENST00000451859	OLFM4	Q6UX06	510 aa		11.3	□□□□□ -0.6
RFX3-209	ENST00000451859	XAGE3	Q8WTP9	111 aa		11.3	□□□□□ -0.6
RFX3-209	ENST00000451859	NYX	Q9GZU5	481 aa		11.3	□□□□□ -0.6
RFX3-209	ENST00000451859	TAOK3	Q9H2K8	898 aa		11.3	□□□□□ -0.6
RFX3-209	ENST00000451859	RRAGC	Q9HB90	399 aa		11.3	□□□□□ -0.6
RFX3-209	ENST00000451859	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.29	□□□□□ -0.6
RFX3-209	ENST00000451859	HDGFL1	Q5TGJ6	251 aa		11.29	□□□□□ -0.6
RFX3-209	ENST00000451859	SUSD4	Q5VX71	490 aa		11.29	□□□□□ -0.6
RFX3-209	ENST00000451859	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.29	□□□□□ -0.6
RFX3-209	ENST00000451859	COPS6	Q7L5N1	327 aa		11.29	□□□□□ -0.6
RFX3-209	ENST00000451859	MBIP	Q9NS73	344 aa		11.29	□□□□□ -0.6
RFX3-209	ENST00000451859	CHPF2	Q9P2E5	772 aa		11.29	□□□□□ -0.6
RFX3-209	ENST00000451859	TCERG1	O14776	1098 aa	Known RBP	11.28	□□□□□ -0.6
RFX3-209	ENST00000451859	TOMM70	O94826	608 aa		11.28	□□□□□ -0.6
RFX3-209	ENST00000451859	HSPA6	P17066	643 aa		11.28	□□□□□ -0.6
RFX3-209	ENST00000451859	CCDC93	Q567U6	631 aa		11.28	□□□□□ -0.6
RFX3-209	ENST00000451859	LRP10	Q7Z4F1	713 aa		11.28	□□□□□ -0.6
RFX3-209	ENST00000451859	ZNF34	Q8IZ26	560 aa		11.28	□□□□□ -0.6
RFX3-209	ENST00000451859	RPGR	Q92834	1020 aa	Known RBP	11.28	□□□□□ -0.6
RFX3-209	ENST00000451859	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.28	□□□□□ -0.6
RFX3-209	ENST00000451859	ELL2	O00472	640 aa	Predicted RBP	11.27	□□□□□ -0.61
RFX3-209	ENST00000451859	NTSR2	O95665	410 aa		11.27	□□□□□ -0.61
RFX3-209	ENST00000451859	SOGA3	Q5TF21	947 aa		11.27	□□□□□ -0.61
RFX3-209	ENST00000451859	DUSP27	Q5VZP5	1158 aa		11.27	□□□□□ -0.61
RFX3-209	ENST00000451859	PPP1R42	Q7Z4L9	355 aa		11.27	□□□□□ -0.61
RFX3-209	ENST00000451859	CFAP44	Q96MT7	982 aa		11.27	□□□□□ -0.61
RFX3-209	ENST00000451859	MRS2	Q9HD23	443 aa		11.27	□□□□□ -0.61
RFX3-209	ENST00000451859	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
RFX3-209	ENST00000451859	SPEF2	Q9C093	1822 aa		11.27	□□□□□ -0.61
RFX3-209	ENST00000451859	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.27	□□□□□ -0.61
RFX3-209	ENST00000451859	SCN4A	P35499	1836 aa		11.26	□□□□□ -0.61
RFX3-209	ENST00000451859	KLRG2	A4D1S0	409 aa	Predicted RBP	11.26	□□□□□ -0.61
RFX3-209	ENST00000451859	GLTPD2	A6NH11	291 aa		11.26	□□□□□ -0.61
RFX3-209	ENST00000451859	ANP32C	O43423	234 aa		11.26	□□□□□ -0.61
RFX3-209	ENST00000451859	PARP10	Q53GL7	1025 aa		11.26	□□□□□ -0.61
RFX3-209	ENST00000451859	SLC51A	Q86UW1	340 aa		11.26	□□□□□ -0.61
RFX3-209	ENST00000451859	UTP14A	Q9BVJ6	771 aa	Known RBP	11.26	□□□□□ -0.61
RFX3-209	ENST00000451859	MYH3	P11055	1940 aa		11.25	□□□□□ -0.61
RFX3-209	ENST00000451859	CACNA1F	O60840	1977 aa		11.25	□□□□□ -0.61
RFX3-209	ENST00000451859	ALDH1B1	P30837	517 aa		11.25	□□□□□ -0.61
RFX3-209	ENST00000451859	GNAI1	P63096	354 aa		11.25	□□□□□ -0.61
RFX3-209	ENST00000451859	C7orf43	Q8WVR3	580 aa		11.25	□□□□□ -0.61
RFX3-209	ENST00000451859	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.25	□□□□□ -0.61
RFX3-209	ENST00000451859	LTBP3	Q9NS15	1303 aa		11.25	□□□□□ -0.61
RFX3-209	ENST00000451859	RIC1	Q4ADV7	1423 aa		11.25	□□□□□ -0.61
RFX3-209	ENST00000451859	HOXB7	P09629	217 aa		11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	HCLS1	P14317	486 aa	Predicted RBP	11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	VEGFA	P15692	232 aa	Predicted RBP	11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	CALD1	Q05682	793 aa	Known RBP	11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	CRY2	Q49AN0	593 aa		11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	HSP90AB3P	Q58FF7	597 aa		11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	NLRP10	Q86W26	655 aa		11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	SYNE4	Q8N205	404 aa		11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	RBM46	Q8TBY0	533 aa	Known RBP	11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	TSR2	Q969E8	191 aa	Known RBP	11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	RBM17	Q96I25	401 aa	Known RBP	11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	NLRP3	Q96P20	1036 aa		11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	IFT57	Q9NWB7	429 aa		11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	DBF4	Q9UBU7	674 aa	Predicted RBP	11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	TRMT112	Q9UI30	125 aa	Known RBP	11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	SALL2	Q9Y467	1007 aa	Predicted RBP	11.24	□□□□□ -0.61
RFX3-209	ENST00000451859	ATP5J2-PTCD1	G3V325	749 aa		11.23	□□□□□ -0.61
RFX3-209	ENST00000451859	PPEF1	O14829	653 aa	Predicted RBP	11.23	□□□□□ -0.61
RFX3-209	ENST00000451859	DDN	O94850	711 aa	Predicted RBP	11.23	□□□□□ -0.61
RFX3-209	ENST00000451859	ZNF853	P0CG23	659 aa		11.23	□□□□□ -0.61
RFX3-209	ENST00000451859	TCIRG1	Q13488	830 aa		11.23	□□□□□ -0.61
RFX3-209	ENST00000451859	DOK7	Q18PE1	504 aa		11.23	□□□□□ -0.61
RFX3-209	ENST00000451859	RTL5	Q5HYW3	569 aa	Predicted RBP	11.23	□□□□□ -0.61
RFX3-209	ENST00000451859	RTKN2	Q8IZC4	609 aa		11.23	□□□□□ -0.61
RFX3-209	ENST00000451859	ZNF710	Q8N1W2	664 aa		11.23	□□□□□ -0.61
RFX3-209	ENST00000451859	C8orf58	Q8NAV2	365 aa		11.23	□□□□□ -0.61
RFX3-209	ENST00000451859	COL4A5	P29400	1685 aa		11.22	□□□□□ -0.61
RFX3-209	ENST00000451859	HTRA3	P83110	453 aa		11.22	□□□□□ -0.61
RFX3-209	ENST00000451859	ANKRD13D	Q6ZTN6	518 aa		11.22	□□□□□ -0.61
RFX3-209	ENST00000451859	PLBD2	Q8NHP8	589 aa		11.22	□□□□□ -0.61
RFX3-209	ENST00000451859	SH3TC1	Q8TE82	1336 aa		11.22	□□□□□ -0.61
RFX3-209	ENST00000451859	RNF166	Q96A37	237 aa	Predicted RBP	11.22	□□□□□ -0.61
RFX3-209	ENST00000451859	ZNF541	Q9H0D2	1346 aa		11.22	□□□□□ -0.61
RFX3-209	ENST00000451859	PHAX	Q9H814	394 aa	Known RBP	11.22	□□□□□ -0.61
RFX3-209	ENST00000451859	HYPK	Q9NX55	129 aa		11.22	□□□□□ -0.61
RFX3-209	ENST00000451859	LRRC37A	A6NMS7	1700 aa		11.21	□□□□□ -0.61
RFX3-209	ENST00000451859	ABCC4	O15439	1325 aa		11.21	□□□□□ -0.61
RFX3-209	ENST00000451859	POTEC	B2RU33	542 aa		11.21	□□□□□ -0.61
RFX3-209	ENST00000451859		G3V3G9	751 aa		11.21	□□□□□ -0.61
RFX3-209	ENST00000451859	HOXA10	P31260	410 aa	Predicted RBP	11.21	□□□□□ -0.61
RFX3-209	ENST00000451859	IARS	P41252	1262 aa	Known RBP	11.21	□□□□□ -0.61
RFX3-209	ENST00000451859	APLP1	P51693	650 aa		11.21	□□□□□ -0.61
RFX3-209	ENST00000451859	RIC3	Q7Z5B4	369 aa		11.21	□□□□□ -0.61
RFX3-209	ENST00000451859	SMC1B	Q8NDV3	1235 aa		11.21	□□□□□ -0.61
RFX3-209	ENST00000451859	CRAMP1	Q96RY5	1269 aa		11.21	□□□□□ -0.61
RFX3-209	ENST00000451859	COL4A1	P02462	1669 aa		11.2	□□□□□ -0.62
RFX3-209	ENST00000451859	SNED1	Q8TER0	1413 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms