RNA–Protein interactions for RNA: ENST00000448572.1

SSBP3-209, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 454 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-209ENST00000448572 ABCC4O15439 1325 aa13.51□□□□□ -0.25
SSBP3-209ENST00000448572 TRAF5O00463 557 aa13.51□□□□□ -0.25
SSBP3-209ENST00000448572 RPS12P25398 132 aaKnown RBP13.51□□□□□ -0.25
SSBP3-209ENST00000448572 GRAPQ13588 217 aa13.51□□□□□ -0.25
SSBP3-209ENST00000448572 GRAPLQ8TC17 118 aaPredicted RBP13.51□□□□□ -0.25
SSBP3-209ENST00000448572 DPF2Q92785 391 aa13.51□□□□□ -0.25
SSBP3-209ENST00000448572 CFAP44Q96MT7 982 aa13.51□□□□□ -0.25
SSBP3-209ENST00000448572 TRMT112Q9UI30 125 aaKnown RBP13.51□□□□□ -0.25
SSBP3-209ENST00000448572 EIF2S2P20042 333 aaKnown RBP13.5□□□□□ -0.25
SSBP3-209ENST00000448572 REM2Q8IYK8 340 aaPredicted RBP13.5□□□□□ -0.25
SSBP3-209ENST00000448572 CCDC102AQ96A19 550 aa13.5□□□□□ -0.25
SSBP3-209ENST00000448572 EYA3Q99504 573 aa13.5□□□□□ -0.25
SSBP3-209ENST00000448572 ZNF408Q9H9D4 720 aa13.5□□□□□ -0.25
SSBP3-209ENST00000448572 PCDH10Q9P2E7 1040 aa13.5□□□□□ -0.25
SSBP3-209ENST00000448572 CNOT7Q9UIV1 285 aaKnown RBP13.5□□□□□ -0.25
SSBP3-209ENST00000448572 C2orf69Q8N8R5 385 aa13.49□□□□□ -0.25
SSBP3-209ENST00000448572 DCPSQ96C86 337 aaKnown RBP13.49□□□□□ -0.25
SSBP3-209ENST00000448572 PLEKHF1Q96S99 279 aa13.49□□□□□ -0.25
SSBP3-209ENST00000448572 RAD17O75943 681 aa13.48□□□□□ -0.25
SSBP3-209ENST00000448572 HUNKP57058 714 aa13.48□□□□□ -0.25
SSBP3-209ENST00000448572 TCIRG1Q13488 830 aa13.48□□□□□ -0.25
SSBP3-209ENST00000448572 WASHC4Q2M389 1173 aa13.48□□□□□ -0.25
SSBP3-209ENST00000448572 NLRP10Q86W26 655 aa13.48□□□□□ -0.25
SSBP3-209ENST00000448572 GLIS2Q9BZE0 524 aaPredicted RBP13.48□□□□□ -0.25
SSBP3-209ENST00000448572 SAGE1Q9NXZ1 904 aa13.48□□□□□ -0.25
SSBP3-209ENST00000448572 NUP98P52948 1817 aa13.48□□□□□ -0.25
SSBP3-209ENST00000448572 KDM3BQ7LBC6 1761 aa13.48□□□□□ -0.25
SSBP3-209ENST00000448572 G3V3G9 751 aa13.47□□□□□ -0.25
SSBP3-209ENST00000448572 AOC2O75106 756 aa13.47□□□□□ -0.25
SSBP3-209ENST00000448572 RIPK4P57078 832 aa13.47□□□□□ -0.25
SSBP3-209ENST00000448572 DGKZQ13574 1117 aa13.47□□□□□ -0.25
SSBP3-209ENST00000448572 DCAF8Q5TAQ9 597 aa13.47□□□□□ -0.25
SSBP3-209ENST00000448572 COPS6Q7L5N1 327 aa13.47□□□□□ -0.25
SSBP3-209ENST00000448572 MICALL2Q8IY33 904 aa13.47□□□□□ -0.25
SSBP3-209ENST00000448572 CHMP4AQ9BY43 222 aa13.47□□□□□ -0.25
SSBP3-209ENST00000448572 MCOLN1Q9GZU1 580 aa13.47□□□□□ -0.25
SSBP3-209ENST00000448572 COL4A5P29400 1685 aa13.47□□□□□ -0.25
SSBP3-209ENST00000448572 TRPM7Q96QT4 1865 aa13.46□□□□□ -0.25
SSBP3-209ENST00000448572 RGMBQ6NW40 437 aa13.46□□□□□ -0.25
SSBP3-209ENST00000448572 KRT26Q7Z3Y9 468 aa13.46□□□□□ -0.25
SSBP3-209ENST00000448572 LTBP1Q14766 1721 aa13.45□□□□□ -0.26
SSBP3-209ENST00000448572 C6orf229H3BNL8 230 aa13.45□□□□□ -0.26
SSBP3-209ENST00000448572 HOXB7P09629 217 aa13.45□□□□□ -0.26
SSBP3-209ENST00000448572 HCLS1P14317 486 aaPredicted RBP13.45□□□□□ -0.26
SSBP3-209ENST00000448572 FMR1Q06787 632 aaKnown RBP eCLIP13.45□□□□□ -0.26
SSBP3-209ENST00000448572 AIMP1Q12904 312 aaKnown RBP13.45□□□□□ -0.26
SSBP3-209ENST00000448572 C3orf67Q6ZVT6 689 aa13.45□□□□□ -0.26
SSBP3-209ENST00000448572 SULF1Q8IWU6 871 aa13.45□□□□□ -0.26
SSBP3-209ENST00000448572 THUMPD2Q9BTF0 503 aaKnown RBP13.45□□□□□ -0.26
SSBP3-209ENST00000448572 GBA2Q9HCG7 927 aaPredicted RBP13.45□□□□□ -0.26
SSBP3-209ENST00000448572 NSFL1CQ9UNZ2 370 aaKnown RBP13.45□□□□□ -0.26
SSBP3-209ENST00000448572 PDIA6Q15084 440 aa13.44□□□□□ -0.26
SSBP3-209ENST00000448572 USP48Q86UV5 1035 aa13.44□□□□□ -0.26
SSBP3-209ENST00000448572 PLBD2Q8NHP8 589 aa13.44□□□□□ -0.26
SSBP3-209ENST00000448572 XAGE3Q8WTP9 111 aa13.44□□□□□ -0.26
SSBP3-209ENST00000448572 NECTIN2Q92692 538 aa13.44□□□□□ -0.26
SSBP3-209ENST00000448572 ZC3H12CQ9C0D7 883 aaKnown RBP13.44□□□□□ -0.26
SSBP3-209ENST00000448572 DBF4Q9UBU7 674 aaPredicted RBP13.44□□□□□ -0.26
SSBP3-209ENST00000448572 TSKSQ9UJT2 592 aa13.44□□□□□ -0.26
SSBP3-209ENST00000448572 ZNF157P51786 506 aaPredicted RBP13.43□□□□□ -0.26
SSBP3-209ENST00000448572 RALBP1Q15311 655 aa13.43□□□□□ -0.26
SSBP3-209ENST00000448572 SF3B3Q15393 1217 aaKnown RBP13.43□□□□□ -0.26
SSBP3-209ENST00000448572 ANKRD13DQ6ZTN6 518 aa13.43□□□□□ -0.26
SSBP3-209ENST00000448572 LRP10Q7Z4F1 713 aa13.43□□□□□ -0.26
SSBP3-209ENST00000448572 TRPM4Q8TD43 1214 aa13.43□□□□□ -0.26
SSBP3-209ENST00000448572 HIRAP54198 1017 aaPredicted RBP13.42□□□□□ -0.26
SSBP3-209ENST00000448572 FKBP1BP68106 108 aa13.42□□□□□ -0.26
SSBP3-209ENST00000448572 HDGFL1Q5TGJ6 251 aa13.42□□□□□ -0.26
SSBP3-209ENST00000448572 HYPKQ9NX55 129 aa13.42□□□□□ -0.26
SSBP3-209ENST00000448572 PSMD14O00487 310 aa13.41□□□□□ -0.26
SSBP3-209ENST00000448572 TMPOP42166 694 aaKnown RBP13.41□□□□□ -0.26
SSBP3-209ENST00000448572 YDJCA8MPS7 323 aa13.4□□□□□ -0.26
SSBP3-209ENST00000448572 ECE2O60344 883 aa13.4□□□□□ -0.26
SSBP3-209ENST00000448572 RPS8P62241 208 aaKnown RBP13.4□□□□□ -0.26
SSBP3-209ENST00000448572 TRIM28Q13263 835 aaKnown RBP13.4□□□□□ -0.26
SSBP3-209ENST00000448572 PKN2Q16513 984 aaKnown RBP13.4□□□□□ -0.26
SSBP3-209ENST00000448572 PROSER3Q2NL68 480 aa13.4□□□□□ -0.26
SSBP3-209ENST00000448572 KIF4BQ2VIQ3 1234 aa13.4□□□□□ -0.26
SSBP3-209ENST00000448572 TBC1D10BQ4KMP7 808 aaPredicted RBP13.4□□□□□ -0.26
SSBP3-209ENST00000448572 SAMD7Q7Z3H4 446 aa13.4□□□□□ -0.26
SSBP3-209ENST00000448572 AGBL3Q8NEM8 1001 aa13.4□□□□□ -0.26
SSBP3-209ENST00000448572 DBNDD1Q9H9R9 158 aa13.4□□□□□ -0.26
SSBP3-209ENST00000448572 RIMBP2O15034 1052 aa13.39□□□□□ -0.27
SSBP3-209ENST00000448572 ANXA1P04083 346 aa13.39□□□□□ -0.27
SSBP3-209ENST00000448572 MMP14P50281 582 aa13.39□□□□□ -0.27
SSBP3-209ENST00000448572 CALD1Q05682 793 aaKnown RBP13.39□□□□□ -0.27
SSBP3-209ENST00000448572 GOLGA2Q08379 1002 aa13.39□□□□□ -0.27
SSBP3-209ENST00000448572 PODXL2Q9NZ53 605 aa13.39□□□□□ -0.27
SSBP3-209ENST00000448572 ANKIB1Q9P2G1 1089 aa13.39□□□□□ -0.27
SSBP3-209ENST00000448572 ZBTB12Q9Y330 459 aaPredicted RBP13.39□□□□□ -0.27
SSBP3-209ENST00000448572 ANKRD36CQ5JPF3 1778 aa13.39□□□□□ -0.27
SSBP3-209ENST00000448572 CHL1O00533 1208 aa13.38□□□□□ -0.27
SSBP3-209ENST00000448572 IRS4O14654 1257 aaPredicted RBP13.38□□□□□ -0.27
SSBP3-209ENST00000448572 NF2P35240 595 aa13.38□□□□□ -0.27
SSBP3-209ENST00000448572 KIF23Q02241 960 aaPredicted RBP13.38□□□□□ -0.27
SSBP3-209ENST00000448572 WDR43Q15061 677 aaKnown RBP eCLIP13.38□□□□□ -0.27
SSBP3-209ENST00000448572 CCDC152Q4G0S7 254 aa13.38□□□□□ -0.27
SSBP3-209ENST00000448572 RBM26Q5T8P6 1007 aaKnown RBP13.38□□□□□ -0.27
SSBP3-209ENST00000448572 FAM89AQ96GI7 184 aa13.38□□□□□ -0.27
SSBP3-209ENST00000448572 ISCA1Q9BUE6 129 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms