RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 GUCY1B3Q02153 619 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 ST3GAL1Q11201 340 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 KLHL40Q2TBA0 621 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 CWC25Q9NXE8 425 aaPredicted RBP14.31□□□□□ -0.12
PTPRN-204ENST00000423636 LIMCH1Q9UPQ0 1083 aa14.31□□□□□ -0.12
PTPRN-204ENST00000423636 COL15A1P39059 1388 aa14.3□□□□□ -0.12
PTPRN-204ENST00000423636 ZKSCAN1P17029 563 aaPredicted RBP14.3□□□□□ -0.12
PTPRN-204ENST00000423636 CCT2P78371 535 aaKnown RBP14.3□□□□□ -0.12
PTPRN-204ENST00000423636 FOXO4P98177 505 aa14.3□□□□□ -0.12
PTPRN-204ENST00000423636 RUFY2Q8WXA3 655 aa14.3□□□□□ -0.12
PTPRN-204ENST00000423636 TRIM44Q96DX7 344 aaPredicted RBP14.3□□□□□ -0.12
PTPRN-204ENST00000423636 CWC22Q9HCG8 908 aaKnown RBP14.3□□□□□ -0.12
PTPRN-204ENST00000423636 TTC41PQ6P2S7 1318 aa14.3□□□□□ -0.12
PTPRN-204ENST00000423636 BRD1O95696 1058 aa14.3□□□□□ -0.12
PTPRN-204ENST00000423636 SLIT3O75094 1523 aa14.3□□□□□ -0.12
PTPRN-204ENST00000423636 SCARF1Q14162 830 aa14.3□□□□□ -0.12
PTPRN-204ENST00000423636 IQSEC3Q9UPP2 1182 aaPredicted RBP14.3□□□□□ -0.12
PTPRN-204ENST00000423636 KDM3BQ7LBC6 1761 aa14.29□□□□□ -0.12
PTPRN-204ENST00000423636 TTC14Q96N46 770 aa14.29□□□□□ -0.12
PTPRN-204ENST00000423636 CAMK4Q16566 473 aa14.29□□□□□ -0.12
PTPRN-204ENST00000423636 WASHC4Q2M389 1173 aa14.29□□□□□ -0.12
PTPRN-204ENST00000423636 NCOA5Q9HCD5 579 aaKnown RBP14.29□□□□□ -0.12
PTPRN-204ENST00000423636 PCDH11XQ9BZA7 1347 aa14.29□□□□□ -0.12
PTPRN-204ENST00000423636 PCDH11YQ9BZA8 1340 aa14.29□□□□□ -0.12
PTPRN-204ENST00000423636 NECTIN1Q15223 517 aa14.28□□□□□ -0.12
PTPRN-204ENST00000423636 C5P01031 1676 aa14.28□□□□□ -0.12
PTPRN-204ENST00000423636 A0A1B0GUL7 405 aa14.28□□□□□ -0.12
PTPRN-204ENST00000423636 SLC4A9Q96Q91 983 aa14.28□□□□□ -0.12
PTPRN-204ENST00000423636 ZBTB1Q9Y2K1 713 aa14.28□□□□□ -0.12
PTPRN-204ENST00000423636 STX6O43752 255 aa14.28□□□□□ -0.12
PTPRN-204ENST00000423636 HCLS1P14317 486 aaPredicted RBP14.28□□□□□ -0.12
PTPRN-204ENST00000423636 CUL4AQ13619 759 aa14.28□□□□□ -0.12
PTPRN-204ENST00000423636 ATG9AQ7Z3C6 839 aa14.28□□□□□ -0.12
PTPRN-204ENST00000423636 FBXW7Q969H0 707 aa14.28□□□□□ -0.12
PTPRN-204ENST00000423636 CHMP4CQ96CF2 233 aa14.28□□□□□ -0.12
PTPRN-204ENST00000423636 TRPM3Q9HCF6 1732 aaPredicted RBP14.27□□□□□ -0.12
PTPRN-204ENST00000423636 WTIPA6NIX2 430 aaPredicted RBP14.27□□□□□ -0.12
PTPRN-204ENST00000423636 SKOR2Q2VWA4 1001 aaPredicted RBP14.27□□□□□ -0.12
PTPRN-204ENST00000423636 BLOC1S2Q6QNY1 142 aa14.27□□□□□ -0.12
PTPRN-204ENST00000423636 CDC37L1Q7L3B6 337 aa14.27□□□□□ -0.12
PTPRN-204ENST00000423636 DENND2AQ9ULE3 1009 aa14.27□□□□□ -0.12
PTPRN-204ENST00000423636 PXDNLA1KZ92 1463 aa14.27□□□□□ -0.13
PTPRN-204ENST00000423636 CHMP4AQ9BY43 222 aa14.27□□□□□ -0.13
PTPRN-204ENST00000423636 ANAPC15P60006 121 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 CCDC57Q2TAC2 916 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 ATG3Q9NT62 314 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 CACNA1FO60840 1977 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 LMO7Q8WWI1 1683 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 A0A087WWV3 80 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 TAF5LO75529 589 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 IFIT1P09914 478 aaKnown RBP14.26□□□□□ -0.13
PTPRN-204ENST00000423636 CASP7P55210 303 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 LARP1BQ659C4 914 aaKnown RBP14.26□□□□□ -0.13
PTPRN-204ENST00000423636 GIMAP6Q6P9H5 292 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 BICDL1Q6ZP65 573 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 BRF1Q92994 677 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 INCENPQ9NQS7 918 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 RPAP1Q9BWH6 1393 aaPredicted RBP14.26□□□□□ -0.13
PTPRN-204ENST00000423636 CYP21A2P08686 494 aa14.26□□□□□ -0.13
PTPRN-204ENST00000423636 NAP1L5Q96NT1 182 aaPredicted RBP14.26□□□□□ -0.13
PTPRN-204ENST00000423636 FTOQ9C0B1 505 aaKnown RBP eCLIP14.26□□□□□ -0.13
PTPRN-204ENST00000423636 Q6ZUG5 572 aa14.25□□□□□ -0.13
PTPRN-204ENST00000423636 MAP4K1Q92918 833 aa14.25□□□□□ -0.13
PTPRN-204ENST00000423636 ZNF830Q96NB3 372 aaPredicted RBP14.25□□□□□ -0.13
PTPRN-204ENST00000423636 GREM2Q9H772 168 aa14.25□□□□□ -0.13
PTPRN-204ENST00000423636 COPRSQ9NQ92 184 aa14.25□□□□□ -0.13
PTPRN-204ENST00000423636 ZNF142P52746 1687 aaPredicted RBP14.25□□□□□ -0.13
PTPRN-204ENST00000423636 GJB4Q9NTQ9 266 aa14.25□□□□□ -0.13
PTPRN-204ENST00000423636 NCAPD2Q15021 1401 aa14.25□□□□□ -0.13
PTPRN-204ENST00000423636 AOX1Q06278 1338 aa14.25□□□□□ -0.13
PTPRN-204ENST00000423636 APOBRQ0VD83 1088 aa14.25□□□□□ -0.13
PTPRN-204ENST00000423636 STOX1Q6ZVD7 989 aa14.25□□□□□ -0.13
PTPRN-204ENST00000423636 RXRAP19793 462 aa14.24□□□□□ -0.13
PTPRN-204ENST00000423636 OTUD7BQ6GQQ9 843 aa14.24□□□□□ -0.13
PTPRN-204ENST00000423636 PAG1Q9NWQ8 432 aa14.24□□□□□ -0.13
PTPRN-204ENST00000423636 KCNQ2O43526 872 aa14.24□□□□□ -0.13
PTPRN-204ENST00000423636 ZSCAN22P10073 491 aaPredicted RBP14.24□□□□□ -0.13
PTPRN-204ENST00000423636 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.24□□□□□ -0.13
PTPRN-204ENST00000423636 TRMT112Q9UI30 125 aaKnown RBP14.24□□□□□ -0.13
PTPRN-204ENST00000423636 UTYO14607 1347 aa14.24□□□□□ -0.13
PTPRN-204ENST00000423636 H7C1W4 665 aa14.23□□□□□ -0.13
PTPRN-204ENST00000423636 MCM2P49736 904 aa14.23□□□□□ -0.13
PTPRN-204ENST00000423636 PTF1AQ7RTS3 328 aa14.23□□□□□ -0.13
PTPRN-204ENST00000423636 CARD10Q9BWT7 1032 aa14.23□□□□□ -0.13
PTPRN-204ENST00000423636 ZNF609O15014 1411 aa14.23□□□□□ -0.13
PTPRN-204ENST00000423636 ZAP70P43403 619 aa14.23□□□□□ -0.13
PTPRN-204ENST00000423636 ZSWIM6Q9HCJ5 1215 aa14.23□□□□□ -0.13
PTPRN-204ENST00000423636 CEP126Q9P2H0 1117 aa14.23□□□□□ -0.13
PTPRN-204ENST00000423636 TOB2Q14106 344 aaPredicted RBP14.23□□□□□ -0.13
PTPRN-204ENST00000423636 LDHAL6AQ6ZMR3 332 aa14.23□□□□□ -0.13
PTPRN-204ENST00000423636 ERCC4Q92889 916 aaPredicted RBP14.23□□□□□ -0.13
PTPRN-204ENST00000423636 CNNM1Q9NRU3 951 aa14.23□□□□□ -0.13
PTPRN-204ENST00000423636 M0R2C6 588 aa14.22□□□□□ -0.13
PTPRN-204ENST00000423636 METTL24Q5JXM2 366 aa14.22□□□□□ -0.13
PTPRN-204ENST00000423636 HDAC5Q9UQL6 1122 aa14.22□□□□□ -0.13
PTPRN-204ENST00000423636 WDR33Q9C0J8 1336 aaKnown RBP14.22□□□□□ -0.13
PTPRN-204ENST00000423636 APPP05067 770 aa14.22□□□□□ -0.13
PTPRN-204ENST00000423636 TTC39AQ5SRH9 613 aa14.22□□□□□ -0.13
PTPRN-204ENST00000423636 KIF6Q6ZMV9 814 aa14.22□□□□□ -0.13
PTPRN-204ENST00000423636 CCDC144CPQ8IYA2 1237 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms