RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 HYPKQ9NX55 129 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 PCK1P35558 622 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 HELLSQ9NRZ9 838 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC65Q8IXS2 484 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 TSGA10Q9BZW7 698 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 DNAJC25Q9H1X3 360 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 BIN1O00499 593 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 ATP8B1O43520 1251 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 CAPN15O75808 1086 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 MYSM1Q5VVJ2 828 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC70Q6NSX1 233 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 BSDC1Q9NW68 430 aaPredicted RBP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 KIAA1107Q9UPP5 1409 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 KCNV2Q8TDN2 545 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 MSL1Q68DK7 614 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 TRIM58Q8NG06 486 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 DDX19BQ9UMR2 479 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 ODF2Q5BJF6 829 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 CHD1LQ86WJ1 897 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 KIF4BQ2VIQ3 1234 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 AFAP1L1Q8TED9 768 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 CEP85LQ5SZL2 805 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 H3BQF6 201 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 H3BQV1 296 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 IFFO2Q5TF58 517 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 BAIAP2L1Q9UHR4 511 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 RPS6KL1Q9Y6S9 549 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 ACBD5Q5T8D3 534 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-212ENST00000423061 NCAPD3P42695 1498 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 WDR66Q8TBY9 1149 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 GNGT1P63211 74 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 GUCY1B3Q02153 619 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 GBP5Q96PP8 586 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 PYGBP11216 843 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 GSCP56915 257 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-212ENST00000423061 MCM8Q9UJA3 840 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 ZMYND10O75800 440 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 GOLGA6CA6NDK9 693 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 GOLGA6BA6NDN3 693 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 GOLGA6DP0CG33 693 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 SPECC1Q5M775 1068 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 IQCGQ9H095 443 aaKnown RBP3.91□□□□□ -1.78
SYNE1-212ENST00000423061 GOLGA6AQ9NYA3 693 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 ELL2O00472 640 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-212ENST00000423061 TSC22D3Q99576 134 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 ANO2Q9NQ90 1003 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 INTS3Q68E01 1043 aaKnown RBP3.91□□□□□ -1.78
SYNE1-212ENST00000423061 SLC30A9Q6PML9 568 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 NACA2Q9H009 215 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 RBM6P78332 1123 aaKnown RBP3.91□□□□□ -1.78
SYNE1-212ENST00000423061 CEP57L1Q8IYX8 460 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 GOLGA6L9A6NEM1 432 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 SCNN1BP51168 640 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 LAMB3Q13751 1172 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 SWAP70Q9UH65 585 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 PLEKHH1Q9ULM0 1364 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 NDUFAB1O14561 156 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 PPFIA4O75335 1185 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 SNRNP27Q8WVK2 155 aaKnown RBP3.91□□□□□ -1.78
SYNE1-212ENST00000423061 KCNB1Q14721 858 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 HDGFL1Q5TGJ6 251 aa3.91□□□□□ -1.78
SYNE1-212ENST00000423061 CHUKO15111 745 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 TCP11Q8WWU5 503 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 BICC1Q9H694 974 aaKnown RBP3.9□□□□□ -1.78
SYNE1-212ENST00000423061 NKTRP30414 1462 aaKnown RBP3.9□□□□□ -1.78
SYNE1-212ENST00000423061 SLFNL1Q499Z3 407 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 TMEM110Q86TL2 294 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 KIF5BP33176 963 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 INCENPQ9NQS7 918 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 HOOK1Q9UJC3 728 aaKnown RBP3.9□□□□□ -1.78
SYNE1-212ENST00000423061 DNAJC14Q6Y2X3 702 aaPredicted RBP3.9□□□□□ -1.78
SYNE1-212ENST00000423061 SASH1O94885 1247 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 CDC25CP30307 473 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC73Q6ZRK6 1079 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 GOLGA1Q92805 767 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 FCHSD2O94868 740 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 MYBL1P10243 752 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 SCRN1Q12765 414 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.9□□□□□ -1.78
SYNE1-212ENST00000423061 SPATA17Q96L03 361 aa3.9□□□□□ -1.78
SYNE1-212ENST00000423061 APOBRQ0VD83 1088 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 LMBRD2Q68DH5 695 aaPredicted RBP3.9□□□□□ -1.79
SYNE1-212ENST00000423061 RILPL2Q969X0 211 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 CEP128Q6ZU80 1094 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 PPFIA3O75145 1194 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 GOLGA8FQ08AF8 430 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 GOLGA8DPQ0D2H9 430 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 SWT1Q5T5J6 900 aaKnown RBP3.9□□□□□ -1.79
SYNE1-212ENST00000423061 TRIM42Q8IWZ5 723 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 CPLX3Q8WVH0 158 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 ZNF232Q9UNY5 417 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 ZNF711Q9Y462 761 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 RAD50Q92878 1312 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 ANKRD18BA2A2Z9 1011 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 PDCD2Q16342 344 aaPredicted RBP3.9□□□□□ -1.79
SYNE1-212ENST00000423061 SUGP1Q8IWZ8 645 aaKnown RBP3.9□□□□□ -1.79
SYNE1-212ENST00000423061 SIX5Q8N196 739 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 DAPK1P53355 1430 aa3.9□□□□□ -1.79
SYNE1-212ENST00000423061 HSP90AB2PQ58FF8 381 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms