RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 VSIG10Q8N0Z9 540 aa11.93□□□□□ -0.5
VPS53-203ENST00000401468 MBIPQ9NS73 344 aa11.93□□□□□ -0.5
VPS53-203ENST00000401468 E9PSI1 815 aa11.92□□□□□ -0.5
VPS53-203ENST00000401468 EIF4A1P60842 406 aaKnown RBP11.92□□□□□ -0.5
VPS53-203ENST00000401468 DALRD3Q5D0E6 543 aaKnown RBP11.92□□□□□ -0.5
VPS53-203ENST00000401468 C9orf131Q5VYM1 1079 aa11.92□□□□□ -0.5
VPS53-203ENST00000401468 C2CD5Q86YS7 1000 aa11.92□□□□□ -0.5
VPS53-203ENST00000401468 ZNF428Q96B54 188 aa11.92□□□□□ -0.5
VPS53-203ENST00000401468 NMRK2Q9NPI5 230 aa11.92□□□□□ -0.5
VPS53-203ENST00000401468 PIM2Q9P1W9 311 aa11.92□□□□□ -0.5
VPS53-203ENST00000401468 FANCIQ9NVI1 1328 aa11.91□□□□□ -0.5
VPS53-203ENST00000401468 NBPF26B4DH59 902 aa11.91□□□□□ -0.5
VPS53-203ENST00000401468 CAMTA2O94983 1202 aa11.91□□□□□ -0.5
VPS53-203ENST00000401468 NBPF10Q6P3W6 841 aaKnown RBP11.91□□□□□ -0.5
VPS53-203ENST00000401468 DZIP3Q86Y13 1208 aaKnown RBP11.91□□□□□ -0.5
VPS53-203ENST00000401468 NBPF15Q8N660 670 aa11.91□□□□□ -0.5
VPS53-203ENST00000401468 GPHNQ9NQX3 736 aaPredicted RBP11.91□□□□□ -0.5
VPS53-203ENST00000401468 TSPYL4Q9UJ04 414 aa11.91□□□□□ -0.5
VPS53-203ENST00000401468 SALL2Q9Y467 1007 aaPredicted RBP11.91□□□□□ -0.5
VPS53-203ENST00000401468 NPHP1O15259 732 aa11.9□□□□□ -0.5
VPS53-203ENST00000401468 HOXB7P09629 217 aa11.9□□□□□ -0.5
VPS53-203ENST00000401468 FOXK1P85037 733 aa11.9□□□□□ -0.5
VPS53-203ENST00000401468 DUSP27Q5VZP5 1158 aa11.9□□□□□ -0.5
VPS53-203ENST00000401468 PLPP6Q8IY26 295 aa11.9□□□□□ -0.5
VPS53-203ENST00000401468 ZNF622Q969S3 477 aaKnown RBP eCLIP11.9□□□□□ -0.58e-8■■■■□ 21.7
VPS53-203ENST00000401468 MYH16Q9H6N6 1097 aa11.9□□□□□ -0.5
VPS53-203ENST00000401468 RNF181Q9P0P0 153 aa11.9□□□□□ -0.5
VPS53-203ENST00000401468 MYL6BP14649 208 aa11.89□□□□□ -0.51
VPS53-203ENST00000401468 PRR5LQ6MZQ0 368 aa11.89□□□□□ -0.51
VPS53-203ENST00000401468 SLC51AQ86UW1 340 aa11.89□□□□□ -0.51
VPS53-203ENST00000401468 JMYQ8N9B5 988 aa11.89□□□□□ -0.51
VPS53-203ENST00000401468 NECTIN2Q92692 538 aa11.89□□□□□ -0.51
VPS53-203ENST00000401468 CDCA7LQ96GN5 454 aa11.89□□□□□ -0.51
VPS53-203ENST00000401468 LHX6Q9UPM6 363 aa11.89□□□□□ -0.51
VPS53-203ENST00000401468 ANXA1P04083 346 aa11.88□□□□□ -0.51
VPS53-203ENST00000401468 IL6STP40189 918 aaPredicted RBP11.88□□□□□ -0.51
VPS53-203ENST00000401468 HLFQ16534 295 aa11.88□□□□□ -0.51
VPS53-203ENST00000401468 TSR2Q969E8 191 aaKnown RBP11.88□□□□□ -0.51
VPS53-203ENST00000401468 SPEF2Q9C093 1822 aa11.88□□□□□ -0.51
VPS53-203ENST00000401468 A0A087WZG4 1122 aa11.87□□□□□ -0.51
VPS53-203ENST00000401468 C21orf2O43822 256 aa11.87□□□□□ -0.51
VPS53-203ENST00000401468 SNRPA1P09661 255 aaKnown RBP11.87□□□□□ -0.51
VPS53-203ENST00000401468 DSG2Q14126 1118 aa11.87□□□□□ -0.51
VPS53-203ENST00000401468 OLFM4Q6UX06 510 aa11.87□□□□□ -0.51
VPS53-203ENST00000401468 NPM2Q86SE8 214 aaKnown RBP11.87□□□□□ -0.51
VPS53-203ENST00000401468 H0YIN7 160 aa11.86□□□□□ -0.51
VPS53-203ENST00000401468 HTRA3P83110 453 aa11.86□□□□□ -0.51
VPS53-203ENST00000401468 KRT24Q2M2I5 525 aa11.86□□□□□ -0.51
VPS53-203ENST00000401468 TTLL7Q6ZT98 887 aa11.86□□□□□ -0.51
VPS53-203ENST00000401468 CNBD1Q8NA66 436 aa11.86□□□□□ -0.51
VPS53-203ENST00000401468 C8orf58Q8NAV2 365 aa11.86□□□□□ -0.51
VPS53-203ENST00000401468 SETDB2Q96T68 719 aa11.86□□□□□ -0.51
VPS53-203ENST00000401468 TEX13AQ9BXU3 409 aaPredicted RBP11.86□□□□□ -0.51
VPS53-203ENST00000401468 LAS1LQ9Y4W2 734 aaKnown RBP11.86□□□□□ -0.51
VPS53-203ENST00000401468 CT47B1P0C2W7 299 aaPredicted RBP11.85□□□□□ -0.51
VPS53-203ENST00000401468 GPTP24298 496 aa11.85□□□□□ -0.51
VPS53-203ENST00000401468 TTLL6Q8N841 843 aa11.85□□□□□ -0.51
VPS53-203ENST00000401468 ZBTB3Q9H5J0 574 aa11.85□□□□□ -0.51
VPS53-203ENST00000401468 NIP7Q9Y221 180 aaKnown RBP eCLIP11.85□□□□□ -0.51
VPS53-203ENST00000401468 ERBB4Q15303 1308 aa11.85□□□□□ -0.51
VPS53-203ENST00000401468 DDX60Q8IY21 1712 aaKnown RBP11.84□□□□□ -0.51
VPS53-203ENST00000401468 NFKBIEO00221 500 aa11.84□□□□□ -0.51
VPS53-203ENST00000401468 VAMP4O75379 141 aa11.84□□□□□ -0.51
VPS53-203ENST00000401468 EIF2S2P20042 333 aaKnown RBP11.84□□□□□ -0.51
VPS53-203ENST00000401468 EXOSC9Q06265 439 aaKnown RBP11.84□□□□□ -0.51
VPS53-203ENST00000401468 PROSER3Q2NL68 480 aa11.84□□□□□ -0.51
VPS53-203ENST00000401468 ANKRD13DQ6ZTN6 518 aa11.84□□□□□ -0.51
VPS53-203ENST00000401468 NBPF5PQ86XG9 351 aaPredicted RBP11.84□□□□□ -0.51
VPS53-203ENST00000401468 NUTM1Q86Y26 1132 aa11.84□□□□□ -0.51
VPS53-203ENST00000401468 TSPYL6Q8N831 410 aa11.84□□□□□ -0.51
VPS53-203ENST00000401468 PTCD2Q8WV60 388 aaKnown RBP11.84□□□□□ -0.51
VPS53-203ENST00000401468 RRAGCQ9HB90 399 aa11.84□□□□□ -0.51
VPS53-203ENST00000401468 ABCC12Q96J65 1359 aa11.83□□□□□ -0.52
VPS53-203ENST00000401468 LRP10Q7Z4F1 713 aa11.83□□□□□ -0.52
VPS53-203ENST00000401468 KLRG1Q96E93 195 aa11.83□□□□□ -0.52
VPS53-203ENST00000401468 TCERG1O14776 1098 aaKnown RBP11.82□□□□□ -0.52
VPS53-203ENST00000401468 ST5P78524 1137 aa11.82□□□□□ -0.52
VPS53-203ENST00000401468 PDIA6Q15084 440 aa11.82□□□□□ -0.52
VPS53-203ENST00000401468 TWISTNBQ3B726 338 aaPredicted RBP11.82□□□□□ -0.52
VPS53-203ENST00000401468 CHMP4AQ9BY43 222 aa11.82□□□□□ -0.52
VPS53-203ENST00000401468 PDE6BP35913 854 aa11.81□□□□□ -0.52
VPS53-203ENST00000401468 PRPF40BQ6NWY9 871 aaKnown RBP11.81□□□□□ -0.52
VPS53-203ENST00000401468 RNF166Q96A37 237 aaPredicted RBP11.81□□□□□ -0.52
VPS53-203ENST00000401468 YTHDC1Q96MU7 727 aaKnown RBP11.81□□□□□ -0.52
VPS53-203ENST00000401468 BRIP1Q9BX63 1249 aa11.81□□□□□ -0.52
VPS53-203ENST00000401468 UBN2Q6ZU65 1347 aa11.81□□□□□ -0.52
VPS53-203ENST00000401468 POLR2AP24928 1970 aaKnown RBP11.8□□□□□ -0.52
VPS53-203ENST00000401468 GTPBP6O43824 516 aaPredicted RBP11.8□□□□□ -0.52
VPS53-203ENST00000401468 TBC1D12O60347 775 aa11.8□□□□□ -0.52
VPS53-203ENST00000401468 SRGNP10124 158 aa11.8□□□□□ -0.52
VPS53-203ENST00000401468 PBX2P40425 430 aa11.8□□□□□ -0.52
VPS53-203ENST00000401468 BRPF1P55201 1214 aaPredicted RBP11.8□□□□□ -0.52
VPS53-203ENST00000401468 LSM11P83369 360 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS53-203ENST00000401468 AIMP1Q12904 312 aaKnown RBP11.8□□□□□ -0.52
VPS53-203ENST00000401468 ERFEQ4G0M1 354 aa11.8□□□□□ -0.52
VPS53-203ENST00000401468 COL4A1P02462 1669 aa11.8□□□□□ -0.52
VPS53-203ENST00000401468 LMNB1P20700 586 aa11.79□□□□□ -0.52
VPS53-203ENST00000401468 GTF2E1P29083 439 aaPredicted RBP11.79□□□□□ -0.52
VPS53-203ENST00000401468 HDGFL1Q5TGJ6 251 aa11.79□□□□□ -0.52
VPS53-203ENST00000401468 CRISPLD2Q9H0B8 497 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms