RNA–Protein interactions for RNA: ENST00000358528.8

CSDE1-203, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSDE1, Length 4,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-203ENST00000358528 SNRKQ9NRH2 765 aa7.71□□□□□ -1.17
CSDE1-203ENST00000358528 BEND3Q5T5X7 828 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 OTUD7BQ6GQQ9 843 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 TMC6Q7Z403 805 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 RAPGEF4Q8WZA2 1011 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 NAT10Q9H0A0 1025 aaKnown RBP7.71□□□□□ -1.18
CSDE1-203ENST00000358528 ZSWIM6Q9HCJ5 1215 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 PIK3C2BO00750 1634 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 USP32Q8NFA0 1604 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 CCDC69A6NI79 296 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 RPS6KB1P23443 525 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 EIF4A1P60842 406 aaKnown RBP7.71□□□□□ -1.18
CSDE1-203ENST00000358528 NBPF6Q5VWK0 638 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 ZSCAN25Q6NSZ9 544 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 ZNF710Q8N1W2 664 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 NBPF4Q96M43 638 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 ZNF396Q96N95 335 aaPredicted RBP7.71□□□□□ -1.18
CSDE1-203ENST00000358528 SBNO1A3KN83 1393 aa7.71□□□□□ -1.18
CSDE1-203ENST00000358528 AOX1Q06278 1338 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 KRT32Q14532 448 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 KSR2Q6VAB6 950 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 ZNF589Q86UQ0 364 aaPredicted RBP7.7□□□□□ -1.18
CSDE1-203ENST00000358528 TAF6LQ9Y6J9 622 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 SERPINC1P01008 464 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 CHGBP05060 677 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 HSP90AB3PQ58FF7 597 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 COPS6Q7L5N1 327 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 CACTINQ8WUQ7 758 aaKnown RBP7.7□□□□□ -1.18
CSDE1-203ENST00000358528 CRB1P82279 1406 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 A0A1B0GVL5 298 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 STX1AQ16623 288 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 KIF18AQ8NI77 898 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 XAGE3Q8WTP9 111 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 CLSTN2Q9H4D0 955 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 ANO10Q9NW15 660 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 TTC21AQ8NDW8 1320 aa7.7□□□□□ -1.18
CSDE1-203ENST00000358528 TCHHQ07283 1943 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 PLEKHG3A1L390 1219 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 SMTNL1A8MU46 457 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 TFCP2Q12800 502 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 RALYLQ86SE5 291 aaKnown RBP7.69□□□□□ -1.18
CSDE1-203ENST00000358528 A0A087WZG4 1122 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 POLR3GO15318 223 aaPredicted RBP7.69□□□□□ -1.18
CSDE1-203ENST00000358528 SLFNL1Q499Z3 407 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 TTLL5Q6EMB2 1281 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 PHF8Q9UPP1 1060 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 ARHGEF10O15013 1369 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 SFPQP23246 707 aaKnown RBP eCLIP7.69□□□□□ -1.18
CSDE1-203ENST00000358528 LMOD1P29536 600 aaPredicted RBP7.69□□□□□ -1.18
CSDE1-203ENST00000358528 COL9A3Q14050 684 aaPredicted RBP7.69□□□□□ -1.18
CSDE1-203ENST00000358528 TMEM87AQ8NBN3 555 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 IFT172Q9UG01 1749 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 IGSF1Q8N6C5 1336 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 SALL3Q9BXA9 1300 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 TNRQ92752 1358 aa7.69□□□□□ -1.18
CSDE1-203ENST00000358528 PTPDC1A2A3K4 754 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 URI1O94763 535 aaPredicted RBP7.68□□□□□ -1.18
CSDE1-203ENST00000358528 ELF2Q15723 593 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 DBNDD2Q9BQY9 259 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 DNAJC5Q9H3Z4 198 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 FRMPD1Q5SYB0 1578 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 DMTNQ08495 405 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 SNW1Q13573 536 aaKnown RBP7.68□□□□□ -1.18
CSDE1-203ENST00000358528 NECTIN1Q15223 517 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 PTPN21Q16825 1174 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 CFAP100Q494V2 611 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 NFXL1Q6ZNB6 911 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 CCDC144CPQ8IYA2 1237 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 LINS1Q8NG48 757 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 ZNF215Q9UL58 517 aaPredicted RBP7.68□□□□□ -1.18
CSDE1-203ENST00000358528 MARCKSP29966 332 aaPredicted RBP7.68□□□□□ -1.18
CSDE1-203ENST00000358528 POLA2Q14181 598 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 SYT10Q6XYQ8 523 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 C11orf57Q6ZUT1 292 aaPredicted RBP7.68□□□□□ -1.18
CSDE1-203ENST00000358528 PAXBP1Q9Y5B6 917 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 U3KPZ7 1027 aaPredicted RBP7.68□□□□□ -1.18
CSDE1-203ENST00000358528 KCNA6P17658 529 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 TIMM10P62072 90 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 MAP4K1Q92918 833 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 TM6SF1Q9BZW5 370 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 IFNKQ9P0W0 207 aa7.68□□□□□ -1.18
CSDE1-203ENST00000358528 USP6P35125 1406 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 ALDH1L1O75891 902 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 SASH1O94885 1247 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 CCDC144BQ3MJ40 725 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 CCDC82Q8N4S0 544 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 GTF3C6Q969F1 213 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 C8orf76Q96K31 380 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 TRDNQ13061 729 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 PGBD1Q96JS3 809 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 USP28Q96RU2 1077 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 GTPBP4Q9BZE4 634 aaKnown RBP7.67□□□□□ -1.18
CSDE1-203ENST00000358528 HMG20BQ9P0W2 317 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 ARHGAP31Q2M1Z3 1444 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 KNDC1Q76NI1 1749 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 USP27XA6NNY8 438 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 IFIT1P09914 478 aaKnown RBP7.67□□□□□ -1.18
CSDE1-203ENST00000358528 NCBP1Q09161 790 aaKnown RBP7.67□□□□□ -1.18
CSDE1-203ENST00000358528 MCMDC2Q4G0Z9 681 aa7.67□□□□□ -1.18
CSDE1-203ENST00000358528 LMBR1LQ6UX01 489 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms