RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 RARSP54136 660 aaKnown RBP9□□□□□ -0.97
SCN9A-201ENST00000303354 CCDC174Q6PII3 467 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 KLHDC4Q8TBB5 520 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 MRVI1Q9Y6F6 885 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 ABCC5O15440 1437 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 MARCKSP29966 332 aaPredicted RBP9□□□□□ -0.97
SCN9A-201ENST00000303354 PPARDQ03181 441 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 PHAXQ9H814 394 aaKnown RBP9□□□□□ -0.97
SCN9A-201ENST00000303354 A1BGP04217 495 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 NAPAP54920 295 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 WTAPQ15007 396 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 KCNA6P17658 529 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 CPXCR1Q8N123 301 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 FSIP1Q8NA03 581 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 C8orf58Q8NAV2 365 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 LARGE2Q8N3Y3 721 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 RBM17Q96I25 401 aaKnown RBP8.99□□□□□ -0.97
SCN9A-201ENST00000303354 ORC3Q9UBD5 711 aaPredicted RBP8.99□□□□□ -0.97
SCN9A-201ENST00000303354 TFCP2Q12800 502 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 SPA17Q15506 151 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 NEK1Q96PY6 1258 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 TEX13AQ9BXU3 409 aaPredicted RBP8.99□□□□□ -0.97
SCN9A-201ENST00000303354 ZSWIM4Q9H7M6 989 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 ZSCAN31Q96LW9 406 aaPredicted RBP8.99□□□□□ -0.97
SCN9A-201ENST00000303354 BACH1O14867 736 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 SSFA2P28290 1259 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 ERICH4A6NGS2 130 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 USH1GQ495M9 461 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 RNF216Q9NWF9 866 aaPredicted RBP8.99□□□□□ -0.97
SCN9A-201ENST00000303354 NPHP3Q7Z494 1330 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 SYNJ1O43426 1573 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 ERCC4Q92889 916 aaPredicted RBP8.99□□□□□ -0.97
SCN9A-201ENST00000303354 PAGR1Q9BTK6 254 aa8.99□□□□□ -0.97
SCN9A-201ENST00000303354 WDR7Q9Y4E6 1490 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 RNF41Q9H4P4 317 aaPredicted RBP8.98□□□□□ -0.97
SCN9A-201ENST00000303354 LUC7LQ9NQ29 371 aaKnown RBP8.98□□□□□ -0.97
SCN9A-201ENST00000303354 CBFA2T2O43439 604 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 TNNI2P48788 182 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 GSTO1P78417 241 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 DYDC1Q8WWB3 177 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 TTC21BQ7Z4L5 1316 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 GOLGA6L10A0A0M3HER8 536 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 TRIM27P14373 513 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 RBM25P49756 843 aaKnown RBP8.98□□□□□ -0.97
SCN9A-201ENST00000303354 TCP11L1Q9NUJ3 509 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 KIF5BP33176 963 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 MCM7P33993 719 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 ARHGAP29Q52LW3 1261 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 CCDC129Q6ZRS4 1044 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 BRF1Q92994 677 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 EIF4A2Q14240 407 aaKnown RBP8.98□□□□□ -0.97
SCN9A-201ENST00000303354 NCOA7Q8NI08 942 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 HFM1A2PYH4 1435 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 ZRSR2Q15696 482 aaKnown RBP8.98□□□□□ -0.97
SCN9A-201ENST00000303354 EVI5LQ96CN4 794 aa8.98□□□□□ -0.97
SCN9A-201ENST00000303354 H0YIN7 160 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.97□□□□□ -0.97
SCN9A-201ENST00000303354 ZFP91Q96JP5 570 aaPredicted RBP8.97□□□□□ -0.97
SCN9A-201ENST00000303354 PTPDC1A2A3K4 754 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 TRIM37O94972 964 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 GCP02774 474 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 PTGS1P23219 599 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 TIMM10P62072 90 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 TTF1Q15361 905 aaPredicted RBP8.97□□□□□ -0.97
SCN9A-201ENST00000303354 FAM47CQ5HY64 1035 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 TCP10L2B9ZVM9 353 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 MAP3K11Q16584 847 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 PPIP5K1Q6PFW1 1433 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 CCDC196A0A1B0GTZ2 297 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 MPHOSPH6Q99547 160 aaKnown RBP8.97□□□□□ -0.97
SCN9A-201ENST00000303354 ANO3Q9BYT9 981 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 SMTNL1A8MU46 457 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 URI1O94763 535 aaPredicted RBP8.97□□□□□ -0.97
SCN9A-201ENST00000303354 CASQ1P31415 396 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 UBA7P41226 1012 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 Q6ZUG5 572 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 RAB34Q9BZG1 259 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 NYXQ9GZU5 481 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 DENND4BO75064 1496 aaPredicted RBP8.97□□□□□ -0.97
SCN9A-201ENST00000303354 MBD3O95983 291 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 IGHDP01880 384 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 LDHBP07195 334 aaKnown RBP8.97□□□□□ -0.97
SCN9A-201ENST00000303354 MRE11P49959 708 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 CCDC191Q8NCU4 936 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 PICK1Q9NRD5 415 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 ERICH3Q5RHP9 1530 aa8.97□□□□□ -0.97
SCN9A-201ENST00000303354 TBCAO75347 108 aaKnown RBP8.96□□□□□ -0.97
SCN9A-201ENST00000303354 CNBD1Q8NA66 436 aa8.96□□□□□ -0.97
SCN9A-201ENST00000303354 RNF169Q8NCN4 708 aa8.96□□□□□ -0.97
SCN9A-201ENST00000303354 ARMT1Q9H993 441 aa8.96□□□□□ -0.97
SCN9A-201ENST00000303354 ALG1Q9BT22 464 aa8.96□□□□□ -0.97
SCN9A-201ENST00000303354 AATFQ9NY61 560 aaKnown RBP eCLIP8.96□□□□□ -0.97
SCN9A-201ENST00000303354 TSPYL6Q8N831 410 aa8.96□□□□□ -0.98
SCN9A-201ENST00000303354 PLEKHH2Q8IVE3 1493 aa8.96□□□□□ -0.98
SCN9A-201ENST00000303354 DNAI2Q9GZS0 605 aa8.96□□□□□ -0.98
SCN9A-201ENST00000303354 FANCAO15360 1455 aa8.96□□□□□ -0.98
SCN9A-201ENST00000303354 LRSAM1Q6UWE0 723 aa8.96□□□□□ -0.98
SCN9A-201ENST00000303354 IL27Q8NEV9 243 aa8.96□□□□□ -0.98
SCN9A-201ENST00000303354 DHX58Q96C10 678 aa8.96□□□□□ -0.98
SCN9A-201ENST00000303354 BICC1Q9H694 974 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms