RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 LHX4Q969G2 390 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF582Q96NG8 517 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CDK15Q96Q40 435 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 LYSMD1Q96S90 227 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 FDXACB1Q9BRP7 624 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM175Q9BSA9 504 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CSTL1Q9H114 145 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM181Q9P2C4 612 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 KANTRA0A1W2PQU2 76 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 APRTP07741 180 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SFTPBP07988 381 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SMIM17P0DL12 118 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 OR10A3P58181 314 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 H3F3AP84243 136 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 RAB39AQ14964 217 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TTLL9Q3SXZ7 439 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TPRG1LQ5T0D9 272 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GGNBP1Q5YKI7 109 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 REEP3Q6NUK4 255 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PUSL1Q8N0Z8 303 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 BEST4Q8NFU0 473 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 OR2T27Q8NH04 317 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ZNRF4Q8WWF5 429 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 BIRC7Q96CA5 298 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SENP8Q96LD8 212 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF778Q96MU6 729 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NXF2Q9GZY0 626 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 DCP1AQ9NPI6 582 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 OR51B4Q9Y5P0 310 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TANC1Q9C0D5 1861 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CUX2O14529 1486 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 A0A0D9SG52 128 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ANHXE9PGG2 379 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 IFNL4K9M1U5 179 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GH1P01241 217 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 KLKB1P03952 638 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PYCR1P32322 319 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SNCAP37840 140 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NUDT2P50583 147 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 DUSP3P51452 185 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PTPRCAPQ14761 206 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TIGD5Q53EQ6 642 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 RNF144BQ7Z419 303 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 BIVMQ86UB2 503 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SLC44A3Q8N4M1 653 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM102Q8N9M5 508 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CADM4Q8NFZ8 388 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 OR52I1Q8NGK6 324 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ZFP90Q8TF47 636 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 DVL3Q92997 716 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NEU1Q99519 415 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 EFCAB11Q9BUY7 163 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 COMMD9Q9P000 198 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PLXNA2O75051 1894 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 RIMS2Q9UQ26 1411 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CYP26A1O43174 497 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 BMP5P22003 454 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 FOXL2P58012 376 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 HSD11B2P80365 405 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 KEAP1Q14145 624 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 GAMTQ14353 236 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PRR31Q5SQ13 230 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 RNF165Q6ZSG1 346 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CCDC190Q86UF4 302 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 BAHD1Q8TBE0 780 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM209Q96SK2 561 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM106CQ9BVX2 250 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CFHR5Q9BXR6 569 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 G6PC2Q9NQR9 355 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MOKQ9UQ07 419 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 ADGRG1Q9Y653 693 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CEP164Q9UPV0 1460 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 HFM1A2PYH4 1435 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 A0A0B4J2A0 478 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 H3BMH7 237 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MPZL2O60487 215 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CPNE6O95741 557 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CRYBA1P05813 215 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 IL11P20809 199 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 CLCN3P51790 818 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 TSPAN31Q12999 210 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SLC10A1Q14973 349 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 OXA1LQ15070 435 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 OGFOD3Q6PK18 319 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 HACD2Q6Y1H2 254 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SH3RF2Q8TEC5 729 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SMPDL3AQ92484 453 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SCMH1Q96GD3 660 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NSUN5Q96P11 429 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 NACC1Q96RE7 527 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 C20orf85Q9H1P6 137 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 RDH14Q9HBH5 336 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MYOZ1Q9NP98 299 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 MBNL3Q9NUK0 354 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SHPKQ9UHJ6 478 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 EXOSC1Q9Y3B2 195 aaKnown RBP3.32□□□□□ -1.88
SCN1A-221ENST00000641996 FAM230AA0A1W2PPH8 454 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 PRKYO43930 277 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SYPP08247 313 aa3.32□□□□□ -1.88
SCN1A-221ENST00000641996 SRYQ05066 204 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms