RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 SCAMP2O15127 329 aaKnown RBP10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 RGS9O75916 674 aaPredicted RBP10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 AK1P00568 194 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 LINC00032P0C843 101 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 NEFHP12036 1026 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 NPR2P20594 1047 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 RYKP34925 604 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 THBS4P35443 961 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 HPCAL1P37235 193 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 LIMS1P48059 325 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 ARFIP2P53365 341 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 DNAJB13P59910 316 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 UBE2NP61088 152 aaKnown RBP10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 CCNIQ14094 377 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 CASP8Q14790 479 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 ARHGAP11BQ3KRB8 267 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 TBRG1Q3YBR2 411 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 AP1ARQ63HQ0 302 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 SHQ1Q6PI26 577 aaKnown RBP10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 RNF165Q6ZSG1 346 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 AAED1Q7RTV5 226 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 ZIC4Q8N9L1 334 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 FAM71CQ8NEG0 241 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 NUP37Q8NFH4 326 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 OR1K1Q8NGR3 316 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 SFXN5Q8TD22 340 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 PMM1Q92871 262 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 TMEM186Q96B77 213 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 AURKBQ96GD4 344 aaPredicted RBP10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 JMJD8Q96S16 334 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 TXLNGYQ9BZA5 131 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 TUBB1Q9H4B7 451 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 ZNF442Q9H7R0 627 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 ZNF696Q9H7X3 374 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 HIF1ANQ9NWT6 349 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 CRNNQ9UBG3 495 aaPredicted RBP10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 MKLN1Q9UL63 735 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 EMCNQ9ULC0 261 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 GRIP1Q9Y3R0 1128 aa10.07□□□□□ -0.8
CLSTN3-209ENST00000539982 NUP214P35658 2090 aaPredicted RBP10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 ARPC4-TTLL3A0A0A6YYG9 625 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 TMEM129A0AVI4 362 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 SH3PXD2BA1X283 911 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 TMEM114B3SHH9 223 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 LYNX1G3V0Z9 82 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 AZIN1O14977 448 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 ZNF208O43345 1280 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 ATP8B1O43520 1251 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 KRT33AO76009 404 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 C6orf47O95873 294 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 IGLV1-44P01699 117 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 IGFBP1P08833 259 aaPredicted RBP10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 CECR9P0C854 216 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 LYNX1P0DP58 116 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 IMPDH2P12268 514 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 CCNA2P20248 432 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 MATN1P21941 496 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 CALCRP30988 508 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 HTR3AP46098 478 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 HGFACQ04756 655 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 ADRM1Q16186 407 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 MAPK14Q16539 360 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 GALNTL6Q49A17 601 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 LIPMQ5VYY2 423 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 PAQR6Q6TCH4 344 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 SPATA21Q7Z572 469 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 SVOPLQ8N434 492 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 FAM169BQ8N8A8 192 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 OIT3Q8WWZ8 545 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 BCL2L2Q92843 193 aaPredicted RBP10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 DDIT4LQ96D03 193 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 COQ8BQ96D53 544 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 ANKRD27Q96NW4 1050 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 SF3B5Q9BWJ5 86 aaKnown RBP10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 ZNF350Q9GZX5 532 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 PIF1Q9H611 641 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 MOV10Q9HCE1 1003 aaKnown RBP10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 ATAD3AQ9NVI7 634 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 PCDHGB4Q9UN71 923 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 SLC35A3Q9Y2D2 325 aa10.06□□□□□ -0.8
CLSTN3-209ENST00000539982 TMED7-TICAM2A0A0A6YYA0 188 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 NR5A2O00482 541 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 TMPRSS2O15393 492 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 CFLARO15519 480 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 BCAS1O75363 584 aaPredicted RBP10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 LGI1O95970 557 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 CHEK2O96017 543 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 MSMBP08118 114 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 GUSBP08236 651 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 ADRA2AP08913 450 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 HOXB1P14653 301 aaPredicted RBP10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 IDH2P48735 452 aaKnown RBP10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 MAP2K6P52564 334 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 RPS26P62854 115 aaKnown RBP10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 DEFA6Q01524 100 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 IL1RL1Q01638 556 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 AWAT1Q58HT5 328 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 OTUD3Q5T2D3 398 aaPredicted RBP10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 THSD4Q6ZMP0 1018 aa10.05□□□□□ -0.8
CLSTN3-209ENST00000539982 TRMT10CQ7L0Y3 403 aaKnown RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms