RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PGBD2Q6P3X8 592 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 TEX261Q6UWH6 196 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 HACD2Q6Y1H2 254 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 KMT5CQ86Y97 462 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CCDC71Q8IV32 467 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 GDPD1Q8N9F7 314 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 RELL2Q8NC24 303 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CDS1Q92903 461 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CACYBPQ9HB71 228 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CLN6Q9NWW5 311 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 IL20RAQ9UHF4 553 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 SLC13A4Q9UKG4 626 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 U3KQ87 197 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 TNRC6BQ9UPQ9 1833 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 TGFBR3LH3BV60 316 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 RNASET2O00584 256 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CYR61O00622 381 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 SUV39H1O43463 412 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 FRS3O43559 492 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 TLX2O43763 284 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CXCL3P19876 107 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 STOMP27105 288 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 SCRN3Q0VDG4 424 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 ZNF79Q15937 498 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 LRRC37A5PQ49AS3 106 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 GCNT6Q5T4J0 391 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 MRM1Q6IN84 353 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 POMZP3Q6PJE2 187 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CASP12Q6UXS9 341 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CREB3L2Q70SY1 520 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CPNE2Q96FN4 548 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CXorf58Q96LI9 332 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 ZNF285Q96NJ3 590 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 NIPSNAP1Q9BPW8 284 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CCDC32Q9BV29 185 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 RAB33BQ9H082 229 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 METTL17Q9H7H0 456 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 IFT22Q9H7X7 185 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 EXTL2Q9UBQ6 330 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 GPR52Q9Y2T5 361 aa7.99□□□□□ -1.13
LIMCH1-209ENST00000509277 CCDC187A0A096LP49 1063 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 REM1O75628 298 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 CCNB2O95067 398 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 PAHP00439 452 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 CELA2AP08217 269 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 HPGDP15428 266 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 DLSTP36957 453 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 CCR6P51684 374 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 C19orf57Q0VDD7 668 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SCARB2Q14108 478 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 RGNQ15493 299 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SPHARQ15513 63 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ATP1A1-AS1Q5TC04 95 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 RHBDD2Q6NTF9 364 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 LRFN4Q6PJG9 635 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 TSPYL5Q86VY4 417 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 OR4N2Q8NGD1 307 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 FANK1Q8TC84 345 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ELP4Q96EB1 424 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SENP5Q96HI0 755 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 DCLRE1CQ96SD1 692 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ADAT1Q9BUB4 502 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 BARHL1Q9BZE3 327 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 NIT2Q9NQR4 276 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 PCDHGB2Q9Y5G2 931 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 IQCMA0A1B0GVH7 501 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 L7N2F9 121 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 PDCD5O14737 125 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SCN2BO60939 215 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 LY86O95711 162 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 S100A6P06703 90 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 GP1BAP07359 652 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 UCHL1P09936 223 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ACSM4P0C7M7 580 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 CELP19835 753 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 FPR1P21462 350 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 UQCRC2P22695 453 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 NR0B1P51843 470 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 PER3P56645 1201 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 RPS15P62841 145 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 HSF2Q03933 536 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SRSF6Q13247 344 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ZNHIT3Q15649 155 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 GRK1Q15835 563 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 EXOC3L2Q2M3D2 409 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 IQCCQ4KMZ1 466 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 BEX5Q5H9J7 111 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 PAPD4Q6PIY7 484 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SLC30A8Q8IWU4 369 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 OR52P1PQ8NH57 321 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 LHFPL5Q8TAF8 219 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SUN3Q8TAQ9 357 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 IPCEF1Q8WWN9 437 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 ANKRD9Q96BM1 317 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 TMEM80Q96HE8 168 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 LMF1Q96S06 567 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 GINS4Q9BRT9 223 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 SARGQ9BW04 601 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 RNF32Q9H0A6 362 aa7.98□□□□□ -1.13
LIMCH1-209ENST00000509277 KCNN2Q9H2S1 579 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms